Browse Element(s) Details


OsAffx.7800.1.S1_at

Description tigr:9640.m03432
TID=OsAffx.7800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35470OsAffx.21743.1.S1_s_at11/1112+21538011..21539415expressed protein
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7800.1.S1_at--580--6551Chr12:21547165..21547189 (25 bp)
GATTATTTTCCCATATTACGAGCAT
LOC_Os12g35490
OsAffx.7800.1.S1_at--1005--6031Chr12:21547137..21547161 (25 bp)
GAGATCGATTCAGCTTCTGGTGAAA
LOC_Os12g35490
OsAffx.7800.1.S1_at--738--10591Chr12:21547103..21547127 (25 bp)
TTCTCCCCTGTTACTTTCTACAATT
LOC_Os12g35490
OsAffx.7800.1.S1_at--548--3411Chr12:21546983..21547007 (25 bp)
CAGCAGCTCTTTCTACTTTGATATG
LOC_Os12g35490
OsAffx.7800.1.S1_at--339--6611Chr12:21546945..21546969 (25 bp)
GATTGTGATTCACTGCGCAAACCGC
LOC_Os12g35490
OsAffx.7800.1.S1_at--490--4591Chr12:21546931..21546955 (25 bp)
GCGCAAACCGCAAGACACTGTGTAT
LOC_Os12g35490
OsAffx.7800.1.S1_at--1124--2211Chr12:21546898..21546922 (25 bp)
ACAAGTCTCGGAAACTCTTCTGATA
LOC_Os12g35490
OsAffx.7800.1.S1_at--1160--7451Chr12:21546863..21546887 (25 bp)
GTGTGAGACACTTTGGCATACCATT
LOC_Os12g35490
OsAffx.7800.1.S1_at--1073--6051Chr12:21546801..21546825 (25 bp)
GAGTTAGGCTACTGGTTTCTGCTGA
LOC_Os12g35490
OsAffx.7800.1.S1_at--769--51Chr12:21546759..21546783 (25 bp)
ATTGAGCATGCCCATAGGTACACAA
LOC_Os12g35490
OsAffx.7800.1.S1_at--1065--31Chr12:21546051..21546071 (21 bp)
ATTGTGATATCGATGGCCCGTTTTC
LOC_Os12g35490
Target Sequence 
GATTATTTTCCCATATTACGAGCATGAAGAGATCGATTCAGCTTCTGGTGAAAAGAAGAAAGTTCTCCCCTGTTACTTTC
TACAATTTCAGCATAATTGTATGGAAGTCCCTGAAGTTCATGAGCGTGAGAAGCTGGAGAAGTTTCAAAGGTTTTTGGGC
TGTCATCCAGCTTTCATGTCTCCAGCAGCTCTTTCTACTTTGATATGCCATCTGTACAGAGATTGTGATTCACTGCGCAA
ACCGCAAGACACTGTGTATGAGCCATTACAAGTCTCGGAAACTCTTCTGATAGAATGGAGAGGTGTGAGACACTTTGGCA
TACCATTTTCAAATGTCTATTGGCATTTCTTTGTGGATGTTTATGAGTTAGGCTACTGGTTTCTGCTGAAATATCTGAGA
AACTTTATTGAGCATGCCCATAGGTACACAAAGGACCAAGGGACTGTCCTGGACATAGTTACTACTGCTTTGATGATTGG
GGAATACCTTTCAAAATTTGTGCCACAATTGATTTTGTTTATAGTGAGAAATTGTGATATCGATGGCCCGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis