Browse Element(s) Details


OsAffx.21743.1.S1_s_at

Description tigr:9640.m03430
TID=OsAffx.21743.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3547011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35440OsAffx.32035.1.S1_at11/1112+21515914..21516225hypothetical protein
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35470OsAffx.21743.1.S1_s_at11/1112+21538011..21539415expressed protein
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21743.1.S1_s_at--838--6552Chr01:36651451..36651475 (25 bp)
GATTCATTGGGTTCTGTCAACCAAA
NONE
OsAffx.21743.1.S1_s_at--503--6152Chr01:36651506..36651530 (25 bp)
GAGGTCCTGATGCTGATGATCTTAG
NONE
OsAffx.21743.1.S1_s_at--450--6071Chr12:21538445..21538469 (25 bp)
GAGTATTCTACGATGTGCACCGTCT
LOC_Os12g35470
OsAffx.21743.1.S1_s_at--223--1771Chr12:21538427..21538451 (25 bp)
ACCGTCTTGGTGAATATGCTGAATC
LOC_Os12g35470
OsAffx.21743.1.S1_s_at--549--4832Chr01:36651607..36651631 (25 bp)
GCTAATCTTACCAGTGTTGCTGCTA
NONE
OsAffx.21743.1.S1_s_at--227--1391Chr12:21538339..21538363 (25 bp)
AGACCTGCATGGATTGTTTTTGGGA
LOC_Os12g35470
OsAffx.21743.1.S1_s_at--303--6812Chr05:1499605..1499624 (20 bp)
GTTTTTGGGAACTAAGCTGAGCGAA
NONE
OsAffx.21743.1.S1_s_at--618--6932Chr01:36651734..36651758 (25 bp)
GTAGGGATCCTGCAGTTGATTGTAA
NONE
OsAffx.21743.1.S1_s_at--839--351Chr12:21538232..21538256 (25 bp)
ATAAGCGTCTGTTATATAGCAGCAG
LOC_Os12g35470
OsAffx.21743.1.S1_s_at--89--2372Chr01:36651906..36651930 (25 bp)
AAAGCCCTATAATTTCTATGTATGG
NONE
OsAffx.21743.1.S1_s_at--361--7891Chr12:21538058..21538082 (25 bp)
GGTTAGCTATGTTTGTCGGTATCTG
LOC_Os12g35470
Target Sequence 
GATTCATTGGGTTCTGTCAACCAAATATGTGATGACATATGTTCTTTTGTTCTAGGAGGTCCTGATGCTGATGATCTTAG
TCATCGTGAGGTTGGAGTATTCTACGATGTGCACCGTCTTGGTGAATATGCTGAATCTTTTGTGGACGAAGGGTTGGCTA
ATCTTACCAGTGTTGCTGCTAGATATATCTAAGCCTAAGGAGACCTGCATGGATTGTTTTTGGGAACTAAGCTGAGCGAA
AACAACAGATGTTGTGACTGATATTATGTCCAGTATTTTATCAGTAGGGATCCTGCAGTTGATTGTAATAAGCGTCTGTT
ATATAGCAGCAGTTGTGTATAGCTGGGTGTGTATGCATGGAACAGCATGTAGGCATGATATATGGTGGTTATGTATTTGT
CTATAGTATATAGTCAGACATATGTAATCTGTGATGGAATGGTAGTGTAAGTAGTAAAGCCCTATAATTTCTATGTATGG
TGGTTAGCTATGTTTGTCGGTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21743.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis