Browse Element(s) Details


Os.55391.1.S1_at

Description gb:AK107996.1
DB_XREF= gi:32993205
TID=Os.55391.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G01, full insert sequence.
FL= gb:AK107996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3555011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55391.1.S1_at--433--811Chr12:21582988..21583411 (25 bp)
ATGGGTGAAGCTTTCGTCGTAGATC
LOC_Os12g35550
Os.55391.1.S1_at--537--6951Chr12:21583405..21583429 (25 bp)
GTAGATCAGTACAACAGGCCACTCC
LOC_Os12g35550
Os.55391.1.S1_at--462--10011Chr12:21583437..21583461 (25 bp)
TAGAACATCCAGACCTGAACCCGGG
LOC_Os12g35550
Os.55391.1.S1_at--157--8151Chr12:21583468..21583492 (25 bp)
GGACACAGACAACTACCTCCAGGAA
LOC_Os12g35550
Os.55391.1.S1_at--113--9211Chr12:21583485..21583509 (25 bp)
TCCAGGAACCATTAGCGTCGCTCAT
LOC_Os12g35550
Os.55391.1.S1_at--354--1811Chr12:21583553..21583577 (25 bp)
ACCCTGGCCCAATGAGCGTGGACAA
LOC_Os12g35550
Os.55391.1.S1_at--626--1331Chr12:21583594..21583618 (25 bp)
AGAGTCGAAGCCTCAGTGGTTCAAA
LOC_Os12g35550
Os.55391.1.S1_at--903--2411Chr12:21583616..21583640 (25 bp)
AAAACATCGTGCAGTTCGTCTCACT
LOC_Os12g35550
Os.55391.1.S1_at--1034--291Chr12:21583694..21583718 (25 bp)
ATAGCGATCTTGCAGGCTGTCTAAC
LOC_Os12g35550
Os.55391.1.S1_at--143--6751Chr12:21583730..21583754 (25 bp)
GTTCATGTTTCCGAGTTTGTTCTGT
LOC_Os12g35550
Os.55391.1.S1_at--349--8771Chr12:21583776..21583800 (25 bp)
TGTTTCGTAGCTTAGGTTCTTTCTT
LOC_Os12g35550
Target Sequence 
ATGGGTGAAGCTTTCGTCGTAGATCAGTACAACAGGCCACTCCCAAGGGTTAGAACATCCAGACCTGAACCCGGGGAAGG
CGGACACAGACAACTACCTCCAGGAACCATTAGCGTCGCTCATGTCCATGAAATCATCCAACTGTACCAAGGAAAGTCCA
GTAACCACCCTGGCCCAATGAGCGTGGACAAGATTGCCTCAAAGTTCAGAGTCGAAGCCTCAGTGGTTCAAAACATCGTG
CAGTTCGTCTCACTTCCGCAGGAAGAACATGTTACCAAGAAAGAGGAATACTGAGAGTCTATAGGATATAGCGATCTTGC
AGGCTGTCTAACACAATTCCTTTGTTCATGTTTCCGAGTTTGTTCTGTGGTGGACTACTAGGAACACAATGTTTCGTAGC
TTAGGTTCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis