Browse Element(s) Details


OsAffx.19979.1.S1_at

Description tigr:9640.m03442
TID=OsAffx.19979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=riboflavin synthase, alpha subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3558011/11riboflavin synthase, alpha subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19979.1.S1_at--116--10751Chr12:21604079..21604103 (25 bp)
TTGACCTCGAGGTGGAGACGAGCAC
LOC_Os12g35580
OsAffx.19979.1.S1_at--1126--6131Chr12:21604087..21604111 (25 bp)
GAGGTGGAGACGAGCACCCTCCTCG
LOC_Os12g35580
OsAffx.19979.1.S1_at--327--1951Chr12:21604442..21604466 (25 bp)
ACGGCGCGAGCCTCACCGTGGTGAA
LOC_Os12g35580
OsAffx.19979.1.S1_at--1136--4071Chr12:21604448..21604472 (25 bp)
CGAGCCTCACCGTGGTGAACGTCGA
LOC_Os12g35580
OsAffx.19979.1.S1_at--488--2931Chr12:21604478..21604502 (25 bp)
AAGGCGGGTGGTTCGACTTCATGCT
LOC_Os12g35580
OsAffx.19979.1.S1_at--165--7911Chr12:21604487..21604511 (25 bp)
GGTTCGACTTCATGCTGGTGAGGTA
LOC_Os12g35580
OsAffx.19979.1.S1_at--107--9371Chr12:21604490..21604514 (25 bp)
TCGACTTCATGCTGGTGAGGTACAC
LOC_Os12g35580
OsAffx.19979.1.S1_at--601--8891Chr12:21604505..21604529 (25 bp)
TGAGGTACACCCAGGACAACATCGT
LOC_Os12g35580
OsAffx.19979.1.S1_at--1162--5611Chr12:21604519..21604543 (25 bp)
GACAACATCGTGCTGCCGAACAAGA
LOC_Os12g35580
OsAffx.19979.1.S1_at--843--3771Chr12:21604564..21604588 (25 bp)
CTCGAGGCCGACATACTCGGCAAGT
LOC_Os12g35580
OsAffx.19979.1.S1_at--915--8391Chr12:21604569..21604593 (25 bp)
GGCCGACATACTCGGCAAGTACGTC
LOC_Os12g35580
Target Sequence 
TTGACCTCGAGGTGGAGACGAGCACCCTCCTCGCCGGGACGCAGCTCGGGGACAGCGTGGCCGTCGACGGGGCCTGCCTC
ACCGTCGCGGCCATCGACGCGGCGGCGTCGACGCTCACCTTCGGCGTCGCGCCGGAGACACTCCGCCGGACGTCCCTCGG
CGGCCGGTCCGCCGGCGACGCCGTGAACCTGGAGCGCGCGCTCACGCCGGCGTCGCGCATGGGGGGCCACTTCGTGCAGG
GCCACGTGGACGGGACGGGGGAGATCGCCGCGTTCCGGGCCGAGGGGGACTCGCTCTGGGTCACCGTGCGCGCGCCGCCG
GAGATCCTGCGGCTGCTGGTGTCCAAGGGCTTCGTCGCCGTCGACGGCGCGAGCCTCACCGTGGTGAACGTCGACGAGGA
AGGCGGGTGGTTCGACTTCATGCTGGTGAGGTACACCCAGGACAACATCGTGCTGCCGAACAAGAAGGTTGGGGACAAGG
TGAACCTCGAGGCCGACATACTCGGCAAGTACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis