Browse Element(s) Details


Os.11380.1.S1_s_at

Description gb:AK061361.1
DB_XREF= gi:32971379
TID=Os.11380.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B12, full insert sequence.
FL= gb:AK061361.1 gb:AK103354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3559011/11expressed protein
LOC_Os04g379301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11380.1.S1_s_at--450--10031Chr12:21607470..21607494 (25 bp)
TAGATCCGGCGCGTTCTCAGTCGGG
LOC_Os12g35590
Os.11380.1.S1_s_at--1055--952Chr12:21607377..21607401 (25 bp)
AGGAGGCATTTGGAAGCTTCCGTTT
LOC_Os12g35590
Os.11380.1.S1_s_at--94--6211Chr12:21607375..21607399 (25 bp)
GAGGCATTTGGAAGCTTCCGTTTTG
LOC_Os12g35590
Os.11380.1.S1_s_at--619--4931Chr12:21607372..21607396 (25 bp)
GCATTTGGAAGCTTCCGTTTTGGAT
LOC_Os12g35590
Os.11380.1.S1_s_at--691--10871Chr12:21607368..21607392 (25 bp)
TTGGAAGCTTCCGTTTTGGATGCTT
LOC_Os12g35590
Os.11380.1.S1_s_at--1051--8171Chr12:21607366..21607390 (25 bp)
GGAAGCTTCCGTTTTGGATGCTTTG
LOC_Os12g35590
Os.11380.1.S1_s_at--15--4231Chr12:21607309..21607333 (25 bp)
CCGCTTCTGGTGCTACTAACGGCAG
LOC_Os12g35590
Os.11380.1.S1_s_at--645--4911Chr12:21607307..21607331 (25 bp)
GCTTCTGGTGCTACTAACGGCAGCG
LOC_Os12g35590
Os.11380.1.S1_s_at--142--10611Chr12:21607305..21607329 (25 bp)
TTCTGGTGCTACTAACGGCAGCGCC
LOC_Os12g35590
Os.11380.1.S1_s_at--649--8611Chr12:21607302..21607326 (25 bp)
TGGTGCTACTAACGGCAGCGCCCTC
LOC_Os12g35590
Os.11380.1.S1_s_at--377--9071Chr12:21607299..21607323 (25 bp)
TGCTACTAACGGCAGCGCCCTCGGA
LOC_Os12g35590
Target Sequence 
TAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTA
CCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGC
TCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11380.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis