Browse Element(s) Details


Os.11380.1.S1_x_at

Description gb:AK061361.1
DB_XREF= gi:32971379
TID=Os.11380.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B12, full insert sequence.
FL= gb:AK061361.1 gb:AK103354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3559011/11expressed protein
LOC_Os08g293101/11hypothetical protein
LOC_Os01g329401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11380.1.S1_x_at--414--2631Chr12:21607530..21607554 (25 bp)
AACCTCGCCCGTGGCTGGCGATGGT
LOC_Os12g35590
Os.11380.1.S1_x_at--1146--5691Chr12:21607494..21607518 (25 bp)
GACGGCCGATTTGGGCTTTAGGTCT
LOC_Os12g35590
Os.11380.1.S1_x_at--761--10331Chr12:21607478..21607502 (25 bp)
TTTAGGTCTAGATCCGGCGCGTTCT
LOC_Os12g35590
Os.11380.1.S1_x_at--539--3971Chr12:21607425..21607449 (25 bp)
CGGTCATTGTGCAGGTGGTGTCCAT
LOC_Os12g35590
Os.11380.1.S1_x_at--762--7371Chr12:21607408..21607432 (25 bp)
GTGTCCATAGTGCAGGTACCCTTCG
LOC_Os12g35590
Os.11380.1.S1_x_at--116--10612Chr02:24957183..24957207 (25 bp)
TTCTGTCAGCGTAACCTTCTTGAAG
NONE
Os.11380.1.S1_x_at--750--10291Chr12:21607060..21607084 (25 bp)
TTTCCTTTAATTAACTGTGCAGTTG
LOC_Os12g35590
Os.11380.1.S1_x_at--512--10651Chr12:21607059..21607083 (25 bp)
TTCCTTTAATTAACTGTGCAGTTGT
LOC_Os12g35590
Os.11380.1.S1_x_at--280--4292Chr10:3427665..3427684 (20 bp)
CCTTTAATTAACTGTGCAGTTGTAA
NONE
Os.11380.1.S1_x_at--566--2575Chr11:17626165..17626184 (20 bp)
AACTGGATCAACTCTCTTTTTCTAT
NONE
Os.11380.1.S1_x_at--399--10196Chr04:11665064..11665089 (25 bp)
TATAGTAAATTGCAGGAGCTCCCTG
NONE
Target Sequence 
AACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAG
TCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGC
ATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAA
CGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAAC
TCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTT
CTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAA
TTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCA
GGAGCTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11380.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis