Browse Element(s) Details


OsAffx.32039.1.S1_x_at

Description tigr:9640.m03446
TID=OsAffx.32039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=respiratory burst oxidase homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3561011/11respiratory burst oxidase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35640OsAffx.7801.1.S1_at11/1112+21633321..21635926adenosine 5'-phosphosulfate reductase 6, putative, expressed
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32039.1.S1_x_at--488--2651Chr12:21619522..21619546 (25 bp)
AACCACTGCACCAGCGTGTACGAGG
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--747--8611Chr12:21619568..21619592 (25 bp)
TGGTGACGATGCTCCAGGCGCTCCA
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--689--4231Chr12:21619654..21619678 (25 bp)
CCGAGCTGGCGCGACGTGTTCAAGC
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--186--7431Chr12:21619669..21619693 (25 bp)
GTGTTCAAGCGCGTCGCCGTGAACC
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--398--4351Chr12:21619787..21619811 (25 bp)
CCACCAAATTCGTCTTCCACAAGGA
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--869--1271Chr12:21619820..21619844 (25 bp)
AGATCATCGGATTCATCGTCGTCAG
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--606--3771Chr12:21619849..21619873 (25 bp)
CTCTCCGGCGGATAATTGAGTTCTT
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--800--10771Chr12:21619864..21619888 (25 bp)
TTGAGTTCTTTCATCCTCTGAGCGA
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--932--5871Chr12:21619883..21619907 (25 bp)
GAGCGAGCTCAGATTAAGTGTACAA
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--385--7391Chr12:21619950..21619974 (25 bp)
GTGAGTGATTGGTTGTTCGTTCGTT
LOC_Os12g35610
OsAffx.32039.1.S1_x_at--340--10371Chr12:21619980..21620004 (25 bp)
TTTTTTCTCCTTCTGTGTAGGTAGA
LOC_Os12g35610
Target Sequence 
AACCACTGCACCAGCGTGTACGAGGAGGGGGACGCGCGGTCGGCGCTGGTGACGATGCTCCAGGCGCTCCACCACGCCAA
GAACGGCGTGGACGTGGTGTCCGGGACGCGGGTGCGCACCCACTTCGCGCGCCCGAGCTGGCGCGACGTGTTCAAGCGCG
TCGCCGTGAACCACCAGGGGCAGCGCGTCGGCGTCTTCTTCTGCGGCGACCAGGCGCTCACGCCGGAGCTCCGCCGCCTC
GCCCAGGACTTCTCCCACAAGACCACCACCAAATTCGTCTTCCACAAGGAGAATTTCTAGATCATCGGATTCATCGTCGT
CAGCTGCCTCTCCGGCGGATAATTGAGTTCTTTCATCCTCTGAGCGAGCTCAGATTAAGTGTACAATTATATACAGATTA
ATGGTGAGAGATAGGACTACATATTTTAGTGAGTGATTGGTTGTTCGTTCGTTTGTTTTTTTTTCTCCTTCTGTGTAGGT
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32039.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis