Browse Element(s) Details


OsAffx.7801.1.S1_at

Description tigr:9640.m03449
TID=OsAffx.7801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3564011/11adenosine 5'-phosphosulfate reductase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35640OsAffx.7801.1.S1_at11/1112+21633321..21635926adenosine 5'-phosphosulfate reductase 6, putative, expressed
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35660NANA12+21646619..21649924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35670Os.7043.1.S1_at11/1112+21658296..21659192Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35680OsAffx.32040.1.S1_at10/1112+21659214..21662145expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7801.1.S1_at--1028--6411Chr12:21634314..21634338 (25 bp)
GATCTTAGCTCAATGTTTCCACGGA
LOC_Os12g35640
OsAffx.7801.1.S1_at--588--3031Chr12:21634178..21634287 (25 bp)
AATGCCATGCCAGCTGTTTTATCAA
LOC_Os12g35640
OsAffx.7801.1.S1_at--256--6511Chr12:21634153..21634177 (25 bp)
GATATGGTGTCCGTAGCTTTCCTTC
LOC_Os12g35640
OsAffx.7801.1.S1_at--111--10191Chr12:21634128..21634152 (25 bp)
TATACTCATAGCTTGTGGACCATAT
LOC_Os12g35640
OsAffx.7801.1.S1_at--596--611Chr12:21634105..21634129 (25 bp)
ATGCGTACTGGCCTGTTGGTTCTAA
LOC_Os12g35640
OsAffx.7801.1.S1_at--746--5871Chr12:21633669..21633693 (25 bp)
GAGCGCAGCTCGAACTGGAAGCACA
LOC_Os12g35640
OsAffx.7801.1.S1_at--1026--5351Chr12:21633603..21633627 (25 bp)
GAAGAGTGAGCCCTACCTAGCATTC
LOC_Os12g35640
OsAffx.7801.1.S1_at--617--2791Chr12:21633557..21633581 (25 bp)
AAGATACTGGTAGCCTTCTTCCCAA
LOC_Os12g35640
OsAffx.7801.1.S1_at--806--3051Chr12:21633510..21633534 (25 bp)
AATCTGGGTCCAATACTTCCGGCAT
LOC_Os12g35640
OsAffx.7801.1.S1_at--27--7291Chr12:21633440..21633464 (25 bp)
GTGCCGCATGCTGTAGACCTGAGGA
LOC_Os12g35640
OsAffx.7801.1.S1_at--636--2151Chr12:21633376..21633400 (25 bp)
ACAGCAGGGTGTGGGCATCATCTCT
LOC_Os12g35640
Target Sequence 
GATCTTAGCTCAATGTTTCCACGGATTAAGCACTTGGCTGTGGAACAAACCAATGCCATGCCAGCTGTTTTATCAAGATA
TGGTGTCCGTAGCTTTCCTTCTATACTCATAGCTTGTGGACCATATGCGTACTGGCCTGTTGGTTCTAAGGAGCTTGACT
CGCTAGTTAATGTTTACACTGCTGTAACTGGTCAAGAACCAATTGCATATCTTGGTCCAAGGAAATGGAGCGCAGCTCGA
ACTGGAAGCACACAGCATGTGAAGCTTTGGAAAAGCTCAATTATTGAAGCTTTGAAGAGTGAGCCCTACCTAGCATTCAG
CATCCTATTTATTTGCCTGAAGATACTGGTAGCCTTCTTCCCAAAGTTCTTCTCCTGCATCAAAGGAATCTGGGTCCAAT
ACTTCCGGCATGCCAACCTTGGCATCCTTGCCAAACTGACCCAGCTGCTCGAATGCGTGCCGCATGCTGTAGACCTGAGG
AAGATCTGGAGCAAATGCAGGCTCATGGGTGGAGCTATGAACAGCAGGGTGTGGGCATCATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis