Browse Element(s) Details


Os.8880.3.S1_x_at

Description gb:D10401.1
DB_XREF= gi:218234
TID=Os.8880.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8880 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for rabbit eukaryotic release factor (T171 gene), partial sequence
DEF=Rice mRNA for rabbit eukaryotic release factor (T171 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3557010/11Tryptophanyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8880.3.S1_x_at--464--8791NONE
TGTTCACCAAATATCTGCAGGATCT
NONE
Os.8880.3.S1_x_at--953--9031Chr12:21594986..21595011 (25 bp)
TGCAGGATCTTTCAAGGTGCCCCTA
LOC_Os12g35570
Os.8880.3.S1_x_at--249--6411Chr12:21594981..21595002 (22 bp)
GATCTTTCAAGGTGCCCCTAGTAAT
LOC_Os12g35570
Os.8880.3.S1_x_at--807--2891Chr12:21594973..21594997 (25 bp)
AAGGTGCCCCTAGTAATACAGCTAA
LOC_Os12g35570
Os.8880.3.S1_x_at--179--4531Chr12:21594968..21594992 (25 bp)
GCCCCTAGTAATACAGCTAACTGAT
LOC_Os12g35570
Os.8880.3.S1_x_at--977--4831Chr12:21594953..21594977 (25 bp)
GCTAACTGATGATGAGAAGTTCTTA
LOC_Os12g35570
Os.8880.3.S1_x_at--1130--6151Chr12:21594909..21594934 (25 bp)
GAGGAAACTAAAAGGCTTGCCGTGA
LOC_Os12g35570
Os.8880.3.S1_x_at--349--2311Chr12:21594899..21594924 (25 bp)
AAAGGCTTGCCGTGAAAATGCAAAA
LOC_Os12g35570
Os.8880.3.S1_x_at--769--3271Chr12:21594879..21594903 (25 bp)
CAAAAGATATCATTGCTTGTGGATT
LOC_Os12g35570
Os.8880.3.S1_x_at--347--71Chr12:21594868..21594892 (25 bp)
ATTGCTTGTGGATTTGATGTCGAAA
LOC_Os12g35570
Os.8880.3.S1_x_at--147--6531Chr12:21594858..21594882 (25 bp)
GATTTGATGTCGAAAGGACTTTCAT
LOC_Os12g35570
Target Sequence 
TGTTCACCAAATATCTGCAGGATCTTTCAAGGTGCCCCTAGTAATACAGCTAACTGATGATGAGAAGTTCTTATGGAAGA
ATTTGACTGTTGAGGAAACTAAAAGGCTTGCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGA
CTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8880.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis