Browse Element(s) Details


OsAffx.25314.1.S1_at

Description tigr:9631.m03072
TID=OsAffx.25314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3127011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25314.1.S1_at--153--4871Chr03:17767037..17767061 (25 bp)
GCTAGCATTGCTCCCATAGATCTAT
LOC_Os03g31270
OsAffx.25314.1.S1_at--1073--7631Chr03:17766993..17767017 (25 bp)
GGGAGGCTTCTCCAAGAGGAATATC
LOC_Os03g31270
OsAffx.25314.1.S1_at--476--1411Chr03:17766730..17766754 (25 bp)
AGACAATTGGGCCTCTACTTCCTTT
LOC_Os03g31270
OsAffx.25314.1.S1_at--405--3411Chr03:17766681..17766705 (25 bp)
CAGCAGCAAGATCAGCATGGCACAA
LOC_Os03g31270
OsAffx.25314.1.S1_at--304--851Chr03:17766665..17766689 (25 bp)
ATGGCACAAACCATGTCTGCTCTGG
LOC_Os03g31270
OsAffx.25314.1.S1_at--478--7171Chr03:17766651..17766675 (25 bp)
GTCTGCTCTGGTCTGCAATAACTTG
LOC_Os03g31270
OsAffx.25314.1.S1_at--586--2491Chr03:17766632..17766656 (25 bp)
AACTTGACTACTCATGCCATTGATG
LOC_Os03g31270
OsAffx.25314.1.S1_at--1020--7311Chr03:17766602..17766626 (25 bp)
GTGCTCATGTTCATTGCACTCCTTG
LOC_Os03g31270
OsAffx.25314.1.S1_at--364--10711Chr03:17766580..17766604 (25 bp)
TTGCCCATCTTACTATTGCCTATGA
LOC_Os03g31270
OsAffx.25314.1.S1_at--891--10211Chr03:17766567..17766591 (25 bp)
TATTGCCTATGACATCCATGCCAAA
LOC_Os03g31270
OsAffx.25314.1.S1_at--899--3272Chr10:21535794..21535876 (24 bp)
CAAAACAGTAGAGTGCATCCATGCA
NONE
Target Sequence 
GCTAGCATTGCTCCCATAGATCTATCAACTATGGAAAGGGCCACGGGAGGCTTCTCCAAGAGGAATATCATTGGTGAAGG
TGGTTTTGCAATTGTTTACAAGACAATTGGGCCTCTACTTCCTTTTCCTCCTTCCTATCCTCCTCTCTGCAGCAGCAAGA
TCAGCATGGCACAAACCATGTCTGCTCTGGTCTGCAATAACTTGACTACTCATGCCATTGATGAGAATGTGCTCATGTTC
ATTGCACTCCTTGCCCATCTTACTATTGCCTATGACATCCATGCCAAAACAGTAGAGTGCATCCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis