Browse Element(s) Details


OsAffx.4929.1.S1_at

Description tigr:9634.m02435
TID=OsAffx.4929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g312541/11hypothetical protein
LOC_Os12g283101/11hypothetical protein
LOC_Os09g212201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4929.1.S1_at--203--7395Chr06:14429935..14429959 (25 bp)
GTGAGGCCTTGCCCGGATCGACTAC
NONE
OsAffx.4929.1.S1_at--722--10692Chr06:14429943..14429967 (25 bp)
TTGCCCGGATCGACTACCTCTGAAC
NONE
OsAffx.4929.1.S1_at--594--511Chr06:14429951..14429975 (25 bp)
ATCGACTACCTCTGAACCGACATCC
NONE
OsAffx.4929.1.S1_at--637--8971Chr06:14429963..14429987 (25 bp)
TGAACCGACATCCACCGCCAAAAAG
NONE
OsAffx.4929.1.S1_at--118--2831Chr06:14429985..14430009 (25 bp)
AAGTTCGACGAACTACCATCATCAG
NONE
OsAffx.4929.1.S1_at--530--6711NONE
GTTCGACGAACTACCATCATCAGAT
NONE
OsAffx.4929.1.S1_at--69--10631NONE
TTCGACGAACTACCATCATCAGATA
NONE
OsAffx.4929.1.S1_at--631--9371Chr06:14429989..14430009 (21 bp)
TCGACGAACTACCATCATCAGATAC
NONE
OsAffx.4929.1.S1_at--579--4091Chr06:14429990..14430183 (25 bp)
CGACGAACTACCATCATCAGATACA
NONE
OsAffx.4929.1.S1_at--514--3551Chr06:14430001..14430401 (25 bp)
CATCATCAGATACATCTGGCATGTA
NONE
OsAffx.4929.1.S1_at--829--3554Chr12:16736132..16736152 (21 bp)
CATCAGATACATCTGGCATGTATCT
LOC_Os12g28310
Target Sequence 
GTGAGGCCTTGCCCGGATCGACTACCTCTGAACCGACATCCACCGCCAAAAAGTTCGACGAACTACCATCATCAGATACA
TCTGGCATGTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis