Browse Element(s) Details


OsAffx.22945.1.S1_at

Description gb:NM_183468.1
DB_XREF= gi:34894063
GEN=P0436E04.16
TID=OsAffx.22945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0436E04.16 (P0436E04.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g149203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g638702/11expressed protein
LOC_Os10g010901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g268101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g263291/11retrotransposon protein, putative, unclassified
LOC_Os03g312501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g343501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein
LOC_Os11g14940OsAffx.18868.1.S1_at3/1111+8404993..8405664hypothetical protein
LOC_Os11g14950Os.19158.1.S1_at10/1111+8411811..8417027acetolactate synthase small subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22945.1.S1_at--1054--4592Chr01:231485..231509 (25 bp)
GAAGTTCCGGTCTTGAGAAAAAGAT
NONE
OsAffx.22945.1.S1_at--201--53511Chr11:15689730..15690082 (25 bp)
GAAGTTCCTGTCTTCCAGACGGTTA
NONE
OsAffx.22945.1.S1_at--590--92729Chr12:17726302..17726719 (25 bp)
TCCTGTCTTCCAGACGGTTAGGTGT
NONE
OsAffx.22945.1.S1_at--89--9491Chr01:231974..231995 (22 bp)
TCTCCTCCGAAAAGGAACGAGGCTT
NONE
OsAffx.22945.1.S1_at--483--2931NONE
AAGGAACGAGGCTTCATCAGCGCGT
NONE
OsAffx.22945.1.S1_at--982--6192Chr01:232546..232568 (23 bp)
GAGGCTTCATCAGCGCGTTCGGTGA
NONE
OsAffx.22945.1.S1_at--350--9611Chr01:232551..232996 (25 bp)
TCATCAGCGCGTTCGGTGAGGGACC
NONE
OsAffx.22945.1.S1_at--843--76378Chr12:18096303..18096327 (25 bp)
GGGAGAGCCGGAATCTAAGCGACAT
NONE
OsAffx.22945.1.S1_at--683--13775Chr12:18096306..18096330 (25 bp)
AGAGCCGGAATCTAAGCGACATACA
NONE
OsAffx.22945.1.S1_at--452--51384Chr12:8190494..8190518 (25 bp)
GCAAACAATACAAACAGGCTATAAG
NONE
OsAffx.22945.1.S1_at--358--91241Chr12:5176463..5176487 (25 bp)
AGGCTATAAGACTACTGAAACAGAG
NONE
Target Sequence 
GAAGTTCCGGTCTTGAGAAAAAGATTTTCCTAAGTGTAGTCCGGAAGTTCCTGTCTTCCAGACGGTTAGGTGTCGCCCGC
GAGAATCCGTTGCATATTGTGGATGTCCCGGGTAAGTTTGTGAAGGATCTCCTCTCCTCCGAAAAGGAACGAGGCTTCAT
CAGCGCGTTCGGTGAGGGACCTCGGCGACTATCTCAAAGTACACCGGAGCGTCGGGAGAGCCGGAATCTAAGCGACATAC
AAAGCAAACAATACAAACAGGCTATAAGACTACTGAAACAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis