Browse Element(s) Details


OsAffx.18868.2.A1_s_at

Description tigr:9639.m01369
TID=OsAffx.18868.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1493011/11hypothetical protein
LOC_Os11g1481011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein
LOC_Os11g14940OsAffx.18868.1.S1_at3/1111+8404993..8405664hypothetical protein
LOC_Os11g14950Os.19158.1.S1_at10/1111+8411811..8417027acetolactate synthase small subunit, putative, expressed
LOC_Os11g14960Os.28943.1.S1_x_at1/1111+8419653..8422891retrotransposon protein, putative, unclassified
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18868.2.A1_s_at--402--8594Chr11:8331333..8331439 (25 bp)
TGGTCACAGAAGCTGAAGCCCAAAA
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--1131--5393Chr11:8331429..8331453 (25 bp)
GAAGCCCAAAATTCCTGTAGTGGCC
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--601--3252Chr11:8331435..8331459 (25 bp)
CAAAATTCCTGTAGTGGCCGTTGCC
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--894--8752Chr11:8331444..8331468 (25 bp)
TGTAGTGGCCGTTGCCCGAATAATT
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--355--6692Chr11:8331454..8331478 (25 bp)
GTTGCCCGAATAATTGCTCGCGTTG
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--989--3152Chr11:8331465..8331489 (25 bp)
AATTGCTCGCGTTGAGGTGGAAGAA
LOC_Os11g14810
OsAffx.18868.2.A1_s_at--1095--3454Chr11:8361677..8361701 (25 bp)
CAGGTGTGACCTGCGGCCTGGAACT
NONE
OsAffx.18868.2.A1_s_at--1065--1754Chr11:8361685..8361709 (25 bp)
ACCTGCGGCCTGGAACTTGGACGAC
NONE
OsAffx.18868.2.A1_s_at--1083--5713Chr11:8361707..8361731 (25 bp)
GACTCGATGTCGTATTTGCTGCCGT
NONE
OsAffx.18868.2.A1_s_at--665--6273Chr11:8361712..8361736 (25 bp)
GATGTCGTATTTGCTGCCGTGGTGA
NONE
OsAffx.18868.2.A1_s_at--551--7213Chr11:8361715..8361739 (25 bp)
GTCGTATTTGCTGCCGTGGTGAGAT
NONE
Target Sequence 
TGGTCACAGAAGCTGAAGCCCAAAATTCCTGTAGTGGCCGTTGCCCGAATAATTGCTCGCGTTGAGGTGGAAGAAGAAGC
TCCAGGTGTGACCTGCGGCCTGGAACTTGGACGACTCGATGTCGTATTTGCTGCCGTGGTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18868.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis