Browse Element(s) Details


Os.19158.1.S1_at

Description gb:CF325673
DB_XREF= gi:33799625
DB_XREF=JMT1--03-N23.g1
CLONE=JMT1--03-N23
TID=Os.19158.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19158 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197133.1 (A.thaliana) acetolactate synthase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1495010/11acetolactate synthase small subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein
LOC_Os11g14940OsAffx.18868.1.S1_at3/1111+8404993..8405664hypothetical protein
LOC_Os11g14950Os.19158.1.S1_at10/1111+8411811..8417027acetolactate synthase small subunit, putative, expressed
LOC_Os11g14960Os.28943.1.S1_x_at1/1111+8419653..8422891retrotransposon protein, putative, unclassified
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified
LOC_Os11g14980OsAffx.30983.1.S1_at11/1111+8434134..8435882pentatricopeptide, putative
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19158.1.S1_at--597--7271Chr11:8413169..8413193 (25 bp)
GTCCAGGATCTTACTCATTTACCAT
LOC_Os11g14950
Os.19158.1.S1_at--596--9871Chr11:8413158..8413182 (25 bp)
TACTCATTTACCATTTGCTGCTAGA
LOC_Os11g14950
Os.19158.1.S1_at--966--1071Chr11:8413091..8413115 (25 bp)
AGGGCTATCCTAGATATTGCTGATA
LOC_Os11g14950
Os.19158.1.S1_at--96--10691Chr11:8413075..8413099 (25 bp)
TTGCTGATATTTTCCGGGCCAAAAC
LOC_Os11g14950
Os.19158.1.S1_at--1035--6891Chr11:8413043..8413067 (25 bp)
GTATCAGATCACACCGTAACTCTTC
LOC_Os11g14950
Os.19158.1.S1_at--684--10511NONE
TTCAGCTTACTGGAGACCTTGATAA
NONE
Os.19158.1.S1_at--733--2311Chr11:8412283..8412307 (25 bp)
AAAGGATGCTCGAGCCCTATGGCAT
LOC_Os11g14950
Os.19158.1.S1_at--648--10691Chr11:8412106..8412130 (25 bp)
TTGCGCCGTGAGTCAGGAGTCGATT
LOC_Os11g14950
Os.19158.1.S1_at--1028--6091Chr11:8412090..8412114 (25 bp)
GAGTCGATTCCAAATACCTCCGTGG
LOC_Os11g14950
Os.19158.1.S1_at--262--4191Chr11:8412060..8412084 (25 bp)
CCCTTCCTCTGTAGTTTGTTTGTCA
LOC_Os11g14950
Os.19158.1.S1_at--917--6611Chr11:8412035..8412059 (25 bp)
GTTGGCAAAGAGGTCATCCCCATCT
LOC_Os11g14950
Target Sequence 
GTCCAGGATCTTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCNCAG
GGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTG
GAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTT
GCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGC
AAAGAGGTCATCCCCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis