Browse Element(s) Details


OsAffx.30983.1.S1_at

Description tigr:9639.m01387
TID=OsAffx.30983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1498011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14950Os.19158.1.S1_at10/1111+8411811..8417027acetolactate synthase small subunit, putative, expressed
LOC_Os11g14960Os.28943.1.S1_x_at1/1111+8419653..8422891retrotransposon protein, putative, unclassified
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified
LOC_Os11g14980OsAffx.30983.1.S1_at11/1111+8434134..8435882pentatricopeptide, putative
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30983.1.S1_at--25--10711Chr11:8434694..8434718 (25 bp)
TTGCGTGGTCACAGTGTTGTGTCCT
LOC_Os11g14980
OsAffx.30983.1.S1_at--620--8671Chr11:8434677..8434701 (25 bp)
TGTGTCCTGGAGTGCCATGATCAAT
LOC_Os11g14980
OsAffx.30983.1.S1_at--237--6231Chr11:8434584..8434608 (25 bp)
GAGGCCTAATTCATTCACATTTACA
LOC_Os11g14980
OsAffx.30983.1.S1_at--1049--2151Chr11:8434562..8434586 (25 bp)
ACAGCGGTTTTAATGGCGTGTTGCC
LOC_Os11g14980
OsAffx.30983.1.S1_at--121--9211Chr11:8434541..8434565 (25 bp)
TGCCACTCAGGCCTTGTCGATGAAG
LOC_Os11g14980
OsAffx.30983.1.S1_at--966--8971Chr11:8434513..8434537 (25 bp)
TGAAGCATTTCAACAGCATAGCCAC
LOC_Os11g14980
OsAffx.30983.1.S1_at--494--7111Chr11:8434476..8434500 (25 bp)
GTCACCAACACTTGAGCACTATGCT
LOC_Os11g14980
OsAffx.30983.1.S1_at--1110--2091Chr11:8434441..8434465 (25 bp)
ACATGCTAGGACGTGCTGGTAGACT
LOC_Os11g14980
OsAffx.30983.1.S1_at--1100--9171Chr11:8434387..8434411 (25 bp)
TGCCGATTCGGCCTGACAAGTGTGT
LOC_Os11g14980
OsAffx.30983.1.S1_at--898--3612Chr05:20717946..20718113 (25 bp)
CTTGGTGGTTGTAGGCTTCATGGAA
NONE
OsAffx.30983.1.S1_at--849--2911Chr11:8434298..8434322 (25 bp)
AAGGAGCTTTTCGACTCAGGATCTA
LOC_Os11g14980
Target Sequence 
TTGCGTGGTCACAGTGTTGTGTCCTGGAGTGCCATGATCAATGCATATGCCAACCATGGGGAGGCAGAAGAGGCTCTCAA
GCTCTTCTCCCTGATGAGGAATGAAGGGGTGAGGCCTAATTCATTCACATTTACAGCGGTTTTAATGGCGTGTTGCCACT
CAGGCCTTGTCGATGAAGGACTGAAGCATTTCAACAGCATAGCCACAGACTACCAAATGTCACCAACACTTGAGCACTAT
GCTTGCATGGTTGACATGCTAGGACGTGCTGGTAGACTTGTTGAAGCATATGGAATCATTAGGGGAATGCCGATTCGGCC
TGACAAGTGTGTGTGGGGTGCCTTCCTTGGTGGTTGTAGGCTTCATGGAATGGTGGAGCTAGCTGAATATGTTGCAAAGG
AGCTTTTCGACTCAGGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis