Browse Element(s) Details


OsAffx.18857.1.S1_at

Description tigr:9639.m01391
TID=OsAffx.18857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid calboxyl methyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1503011/11SAM dependent carboxyl methyltransferase family protein
LOC_Os11g151801/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified
LOC_Os11g14980OsAffx.30983.1.S1_at11/1111+8434134..8435882pentatricopeptide, putative
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15040Os.17356.1.A1_a_at11/1111+8461158..8463673Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os11g15050OsAffx.18858.1.S1_at11/1111+8467277..8468519hypothetical protein
LOC_Os11g15060Os.17356.1.A1_a_at1/1111+8472066..8474370SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15070NANA11+8475955..8478772hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18857.1.S1_at--703--10571Chr11:8452847..8452871 (25 bp)
TTCTCACGGTTCCTACAAATGCGGT
LOC_Os11g15030
OsAffx.18857.1.S1_at--265--6131Chr11:8452947..8452971 (25 bp)
GAGGGACGACCATGGCATTCGAGTT
LOC_Os11g15030
OsAffx.18857.1.S1_at--385--10311Chr11:8452974..8452998 (25 bp)
TTTCACAAGGGCTGCAAACTCTAGT
LOC_Os11g15030
OsAffx.18857.1.S1_at--120--8131Chr11:8454187..8454211 (25 bp)
GGACTCCTTCAACTTGCCATTGTAC
LOC_Os11g15030
OsAffx.18857.1.S1_at--448--1992Chr11:8454210..8454234 (25 bp)
ACTGCCCTTCGGTTGATGAGCTAAA
LOC_Os11g15030
OsAffx.18857.1.S1_at--628--5671Chr11:8454272..8454296 (25 bp)
GACATCCGGCTCTTCGAGATTAACG
LOC_Os11g15030
OsAffx.18857.1.S1_at--487--2771Chr11:8454389..8454413 (25 bp)
AAGACCATCTCTACGAGCCTGAGGG
LOC_Os11g15030
OsAffx.18857.1.S1_at--999--8991Chr11:8454417..8454441 (25 bp)
TGAAGGAGCCCCTGATCGCGAGTCA
LOC_Os11g15030
OsAffx.18857.1.S1_at--775--9331Chr11:8454432..8454456 (25 bp)
TCGCGAGTCATTTCGGAGAGTCCAT
LOC_Os11g15030
OsAffx.18857.1.S1_at--50--8971Chr11:8454460..8454484 (25 bp)
TGACAAGCTCTTCGCGGTGTTTGCT
LOC_Os11g15030
OsAffx.18857.1.S1_at--683--7731Chr11:8454475..8454499 (25 bp)
GGTGTTTGCTCGCTATTTTACCAAC
LOC_Os11g15030
Target Sequence 
TTCTCACGGTTCCTACAAATGCGGTGCAAAGAGATTGTGCCTGGAGGTCGGATGGTGCTGACGATGCTAGGGAGGAATAG
CACAGATGTATTCAGTGCAGGAGGGACGACCATGGCATTCGAGTTGCTTTCACAAGGGCTGCAAACTCTAGTTGCAGAGG
ACTGTGTTGAGAAGGAGAAGCTGGACTCCTTCAACTTGCCATTGTACTGCCCTTCGGTTGATGAGCTAAAGGAGCTAGTG
TGGCAGAATGAGCTGCTTGACATCACCGACATCCGGCTCTTCGAGATTAACGGGAACCCCAATGGCGGCTCAGATCAGTC
AGCAGAGGATGCTGCTGCTGCACCTGTCATCATCCATGGTGCCGCTGCCGCTGAGGCCGCCGGCAAGACCATCTCTACGA
GCCTGAGGGCGGTGAAGGAGCCCCTGATCGCGAGTCATTTCGGAGAGTCCATACTTGACAAGCTCTTCGCGGTGTTTGCT
CGCTATTTTACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis