Browse Element(s) Details


Os.17356.1.A1_a_at

Description gb:CB657230
DB_XREF= gi:29660955
DB_XREF=OSJNEc12G10.r
CLONE=OSJNEc12G10
TID=Os.17356.1
CNT=32
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.17356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129H19, full insert sequence
FL= gb:AY524975.1 gb:AK068035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1504011/11Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os11g150601/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15040Os.17356.1.A1_a_at11/1111+8461158..8463673Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os11g15050OsAffx.18858.1.S1_at11/1111+8467277..8468519hypothetical protein
LOC_Os11g15060Os.17356.1.A1_a_at1/1111+8472066..8474370SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15070NANA11+8475955..8478772hypothetical protein
LOC_Os11g15080NANA11+8479885..8484179retrotransposon protein, putative, unclassified
LOC_Os11g15090NANA11+8486614..8492724retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17356.1.A1_a_at--88--6711Chr11:8462167..8462191 (25 bp)
GTTCCTGAGCAGCTTGATGGCAGCA
LOC_Os11g15040
Os.17356.1.A1_a_at--1147--7612Chr11:8473015..8473039 (25 bp)
GGGAACATTCACATAGGAGCGACTA
LOC_Os11g15060
Os.17356.1.A1_a_at--539--9691Chr11:8462275..8462299 (25 bp)
TCACGGTTCCTCCAGATGAGATGCA
LOC_Os11g15040
Os.17356.1.A1_a_at--759--8111Chr11:8462375..8462399 (25 bp)
GGACGACCACGATATTTGATTTGCT
LOC_Os11g15040
Os.17356.1.A1_a_at--993--1071Chr11:8462406..8462430 (25 bp)
AGGGCTACGTATTCTTGTTGCTGAG
LOC_Os11g15040
Os.17356.1.A1_a_at--585--9551Chr11:8463181..8463205 (25 bp)
TCTTTCAACATTCCAGTGTACTGCC
LOC_Os11g15040
Os.17356.1.A1_a_at--408--1111Chr11:8463195..8463219 (25 bp)
AGTGTACTGCCCTTCAGCTGATGAG
LOC_Os11g15040
Os.17356.1.A1_a_at--844--2071Chr11:8463263..8463287 (25 bp)
ACATTCAACTCTTCGAGATGGATGA
LOC_Os11g15040
Os.17356.1.A1_a_at--1135--5431Chr11:8463288..8463312 (25 bp)
GAACCGCATGCATGACTCGGAGCAA
LOC_Os11g15040
Os.17356.1.A1_a_at--1022--1991Chr11:8463302..8463326 (25 bp)
ACTCGGAGCAAGCAGAGGGCACCAC
LOC_Os11g15040
Os.17356.1.A1_a_at--1080--1611Chr11:8463339..8463363 (25 bp)
AGCGGGACAGAGCATGTCTGCAACT
LOC_Os11g15040
Target Sequence 
GTTCCTGAGCAGCTTGATGGCAGCATGAATGAGGGGAACATTCACATAGGAGCGACTACACCACCATCCGTGGCAAAGCT
CTACCAAAATCAGTTTGAGAAAGACTTCTCACGGTTCCTCCAGATGAGATGCATGGAGATTGTGCCCGGAGGCCGGATGG
TGCTGACGGTTGCTGGGAGGAAGAGCAAAGATGTGTTCAATGCAGGAGGGACGACCACGATATTTGATTTGCTTTCACAA
GGGCTACGTATTCTTGTTGCTGAGGGTCGTGTTGCCAAGGAGAAGCTGGACTCTTTCAACATTCCAGTGTACTGCCCTTC
AGCTGATGAGCTGACGCAGCTGGTGCAGCAGTGCGAGCTGCTTGACATAAGTGACATTCAACTCTTCGAGATGGATGAGA
ACCGCATGCATGACTCGGAGCAAGCAGAGGGCACCACCGCCGCTCACACAGCGGGACAGAGCATGTCTGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17356.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis