Browse Element(s) Details


OsAffx.18868.5.S1_x_at

Description tigr:9639.m01448
TID=OsAffx.18868.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1559010/11hypothetical protein
LOC_Os11g148103/11hypothetical protein
LOC_Os11g149303/11hypothetical protein
LOC_Os06g276101/11hypothetical protein
LOC_Os01g259201/11hypothetical protein
LOC_Os11g325601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein
LOC_Os11g15600OsAffx.18869.1.S1_at11/1111+8849548..8850804hypothetical protein
LOC_Os11g15610OsAffx.18870.1.S1_at9/1111+8852109..8853271hypothetical protein
LOC_Os11g15620OsAffx.18871.1.S1_at11/1111+8855011..8857361F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18868.5.S1_x_at--646--7191Chr11:8836849..8836873 (25 bp)
GTCGGCAACCAGGAGCACTGGACCA
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--1144--9876Chr11:18715327..18715556 (25 bp)
TACTGAACAAGGCAACAAAACTAAA
LOC_Os11g32560
OsAffx.18868.5.S1_x_at--769--1834Chr11:8330224..8330453 (25 bp)
ACTGAACAAGGCAACAAAACTAAAT
LOC_Os11g14810
OsAffx.18868.5.S1_x_at--696--1451NONE
AGAAGAAAGCTATACTCGCTGCCAA
NONE
OsAffx.18868.5.S1_x_at--35--8596Chr11:18716450..18716474 (25 bp)
TGGTTAGTGACCCACCTTCTGTGAT
NONE
OsAffx.18868.5.S1_x_at--982--2631Chr11:8833996..8834020 (25 bp)
AACCATTTCGTCACTGCGGGCAGTT
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--1158--1711Chr11:8833995..8834019 (25 bp)
ACCATTTCGTCACTGCGGGCAGTTA
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--996--4311Chr11:8833994..8834018 (25 bp)
CCATTTCGTCACTGCGGGCAGTTAG
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--88--3591Chr11:8833993..8834017 (25 bp)
CATTTCGTCACTGCGGGCAGTTAGT
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--719--10291Chr11:8833991..8834015 (25 bp)
TTTCGTCACTGCGGGCAGTTAGTGA
LOC_Os11g15590
OsAffx.18868.5.S1_x_at--671--10611Chr11:8833990..8834014 (25 bp)
TTCGTCACTGCGGGCAGTTAGTGAC
LOC_Os11g15590
Target Sequence 
GTCGGCAACCAGGAGCACTGGACCAGCAATGGTTGCGCCGGAATGCCAACCAAAGAATGTGACTACAGGAATGAGGGCCT
CGGGACTGCAAGATCAGGTGGCACTGGTGAGCATCGGCGGGTGGAGCCCTAACCAGGGCGTGCCGCAGCCGGCCATCATC
CTCAACCCTTCCTTCTCGCGCCACAGACAGGGCCTTTGCCCTGGGTGGCCATATTGGGCGGCGGCAATGGGATTGAGCAA
CCGCACTTTAAGTACAGAACTGGAGCCAATGGAATTGAGCACTACTGAACAAGGCAACAAAACTAAATGTTTTAGTGAAC
CTGAGAAGAAAGCTATACTCGCTGCCAAGACAACCAATGTGATGAAAGAGATACAAGTTGAACTAGATGCAAAGAAGCTA
GAGTCTGCAGTACTTCAGGAGGAGCTTGAAAGATTGAAGGCACGGGAGAACTATCGTCACTGTATCAATGACGATGTCCT
CTGGTGGTCACAGAAGCTGGTTAGTGACCCACCTTCTGTGATGACAACCATTTCGTCACTGCGGGCAGTTAGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18868.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis