Browse Element(s) Details


Os.17297.1.S1_at

Description gb:AK059539.1
DB_XREF= gi:32969557
TID=Os.17297.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E06, full insert sequence.
FL= gb:AK059539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0174011/11U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g018801/11Sec63 domain containing protein
LOC_Os06g199301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g155601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g422501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g356801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g122101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g074901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01700OsAffx.24050.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01700Os.55303.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01710Os.18186.1.S1_at11/112+391819..395616expressed protein
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0007131biological_processmeiotic recombination
GO:0051026biological_processchiasma formation
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17297.1.S1_at--340--10778Chr11:8807835..8807859 (23 bp)
TTGAGTTCACCGCTGCTTCAGAAGC
LOC_Os11g15560
Os.17297.1.S1_at--894--6411Chr02:418069..418093 (25 bp)
GATCTACCTGATGTCCGATTCTTAT
LOC_Os02g01740
Os.17297.1.S1_at--296--4051Chr02:418084..418108 (25 bp)
CGATTCTTATCTGGGCTGCGATCAG
LOC_Os02g01740
Os.17297.1.S1_at--910--3892Chr02:487919..487943 (25 bp)
CTGGGTGGTTGCTTGTACGCTCGTA
NONE
Os.17297.1.S1_at--1018--3731Chr02:418241..418265 (25 bp)
CTAATGTCCTATCCACACTTGTATG
LOC_Os02g01740
Os.17297.1.S1_at--994--8731Chr02:418270..418294 (25 bp)
TGTACTCGTTTTTATCTTTAGCCAT
LOC_Os02g01740
Os.17297.1.S1_at--606--10071Chr02:418300..418324 (25 bp)
TAGTGTAACTGATGCTCACCTCTGC
LOC_Os02g01740
Os.17297.1.S1_at--255--7971Chr02:418347..418371 (25 bp)
GGATCTTTATTAGCTAGCCTATGGC
LOC_Os02g01740
Os.17297.1.S1_at--288--872Chr02:418367..418391 (25 bp)
ATGGCTGTGCTTCTTGTGATCATCC
LOC_Os02g01740
Os.17297.1.S1_at--982--9552Chr02:418393..418417 (25 bp)
TCTTATTGTGTTTTTGTCTTCCTGT
LOC_Os02g01740
Os.17297.1.S1_at--686--10151Chr02:418465..418489 (25 bp)
TATCATGCCGTTGGTTTGGCCCGTA
LOC_Os02g01740
Target Sequence 
TTGAGTTCACCGCTGCTTCAGAAGCTGGGAGAAAGGAGTACATGATCTACCTGATGTCCGATTCTTATCTGGGCTGCGAT
CAGGAGTACGAGTTCACCGTCGATGTCATGGATGCTGGAGGGGATTGATCCCAAGGCCAGAAAGAGGATGAAAGCTTTGC
CCAGCCCCCAGGTGTGTATGGAGCTGGGTGGTTGCTTGTACGCTCGTAGCAATTCCTAATGTCCTATCCACACTTGTATG
TGTTTGTACTCGTTTTTATCTTTAGCCATTTTCTTAGTGTAACTGATGCTCACCTCTGCTGCTACCTGTGGTCATCTTTG
GGGATCTTTATTAGCTAGCCTATGGCTGTGCTTCTTGTGATCATCCTTCTTATTGTGTTTTTGTCTTCCTGTTTCATCAA
AGCAAGTCACTAACGTTTTGATTNTTATCTATATCATTTTATCATGCCGTTGGTTTGGCCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis