Browse Element(s) Details


Os.18186.1.S1_at

Description gb:AK073056.1
DB_XREF= gi:32983079
TID=Os.18186.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020O16, full insert sequence.
FL= gb:AK073056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0171011/11expressed protein
LOC_Os07g379901/11Alpha 1,4-glycosyltransferase conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01640NANA2+362746..367311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01649NANA2+367563..368905retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01660NANA2+370805..371257retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01670NANA2+372104..376669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01679NANA2+376921..378263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690Os.35344.3.S1_x_at9/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690Os.35344.18.S1_x_at9/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690OsAffx.22940.5.S1_x_at3/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690OsAffx.828.1.S1_x_at1/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01700OsAffx.24050.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01700Os.55303.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01710Os.18186.1.S1_at11/112+391819..395616expressed protein
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18186.1.S1_at--544--5411Chr02:395062..395086 (25 bp)
GAACCTTACTATGCCAATTCTGGAA
LOC_Os02g01710
Os.18186.1.S1_at--513--10731Chr02:395182..395206 (25 bp)
TTGCTTATTCCAGTGCATAGCTCTT
LOC_Os02g01710
Os.18186.1.S1_at--100--311Chr02:395198..395222 (25 bp)
ATAGCTCTTGCATCTTATTCTGTGA
LOC_Os02g01710
Os.18186.1.S1_at--88--471Chr02:395254..395278 (25 bp)
ATCTGCATAGAGTGTTTGCCTTTAT
LOC_Os02g01710
Os.18186.1.S1_at--68--10191Chr02:395281..395305 (25 bp)
TATAGATGCCTTCTTGGAGACCCTC
LOC_Os02g01710
Os.18186.1.S1_at--217--1111Chr02:395330..395354 (25 bp)
AGTGGGCGACTTTCATAATGCATCT
LOC_Os02g01710
Os.18186.1.S1_at--1115--7751Chr02:395414..395438 (25 bp)
GGTGATCGGTCCCAATAGATTGTCT
LOC_Os02g01710
Os.18186.1.S1_at--43--1951Chr02:395442..395466 (25 bp)
ACTGGTCAGGTCATCTGAACCTTGA
LOC_Os02g01710
Os.18186.1.S1_at--539--3871Chr02:395488..395512 (25 bp)
CTGTTAGAATGTATGCCGCCTTGGT
LOC_Os02g01710
Os.18186.1.S1_at--5--9171Chr02:395501..395525 (25 bp)
TGCCGCCTTGGTAAATATTCCTTGG
LOC_Os02g01710
Os.18186.1.S1_at--418--92Chr02:395517..395541 (25 bp)
ATTCCTTGGCAGATAGTAGCTCTTT
LOC_Os02g01710
Target Sequence 
GAACCTTACTATGCCAATTCTGGAACTGTTTACTGTGGTATAGATGCAGTTTACGTAGAAATGCTTTGGCAGGATTGCTG
CTGCTTACATGATCTGTGAAGTAGGCTGAATGTCTTCAGATTGCTTATTCCAGTGCATAGCTCTTGCATCTTATTCTGTG
AATTACCATGTACTATCTGAAGTTGTGAATTGATCTGCATAGAGTGTTTGCCTTTATTTTATAGATGCCTTCTTGGAGAC
CCTCACAAGTCACAACCAGTTCAACTGAAGTGGGCGACTTTCATAATGCATCTGATTCTGAACACTGGGGTTGCATTTAG
TTACAAGATCAGATTCCAATAGCAAATCGAGAGGTGATCGGTCCCAATAGATTGTCTGAAACTGGTCAGGTCATCTGAAC
CTTGACAAGATCTGTAGTTGTCATTTCTGTTAGAATGTATGCCGCCTTGGTAAATATTCCTTGGCAGATAGTAGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis