Browse Element(s) Details


OsAffx.24051.1.S1_x_at

Description tigr:9630.m00071
TID=OsAffx.24051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative RNA helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g017409/11U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g018804/11Sec63 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01700OsAffx.24050.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01700Os.55303.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01710Os.18186.1.S1_at11/112+391819..395616expressed protein
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0007131biological_processmeiotic recombination
GO:0051026biological_processchiasma formation
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24051.1.S1_x_at--453--2972Chr02:487252..487276 (25 bp)
AATGGATGGCTTACGCTTGCTCTTA
LOC_Os02g01880
OsAffx.24051.1.S1_x_at--178--7672Chr02:487316..487340 (25 bp)
GGGATCGTGATTCTGTTCTTTTACA
LOC_Os02g01880
OsAffx.24051.1.S1_x_at--633--10371Chr02:417609..417633 (25 bp)
TTTTACAACTTCCACATTTCACCAA
LOC_Os02g01740
OsAffx.24051.1.S1_x_at--1006--6211Chr02:417667..417691 (25 bp)
GAGGCCCATTGAGAGCATCTTTGAT
LOC_Os02g01740
OsAffx.24051.1.S1_x_at--1001--10712Chr02:487487..487511 (25 bp)
TTGAATTCTTCAAGCGTTTCCCCAA
LOC_Os02g01880
OsAffx.24051.1.S1_x_at--1004--6831Chr02:417777..417801 (25 bp)
GTTTCCCCAATGTCGATATGGCTTA
LOC_Os02g01740
OsAffx.24051.1.S1_x_at--350--1052Chr02:487578..487602 (25 bp)
AGGTGACCCTGGAGCGTGACATGAC
LOC_Os02g01880
OsAffx.24051.1.S1_x_at--489--7371Chr02:417867..417891 (25 bp)
GTGACATGACGAACTTGCCTTCTGA
LOC_Os02g01740
OsAffx.24051.1.S1_x_at--952--4811Chr02:417963..417987 (25 bp)
GCTCTACCAATCAGTTGCTTGCAAT
LOC_Os02g01740
OsAffx.24051.1.S1_x_at--232--1631Chr02:391474..391498 (25 bp)
AGCGGGATCGGCATAACTGCAGGAA
NONE
OsAffx.24051.1.S1_x_at--657--3471Chr02:391455..391479 (25 bp)
CAGGAACATACCATACCATAACCAT
NONE
Target Sequence 
AATGGATGGCTTACGCTTGCTCTTAATGCAATGGAGCTGAGTCAAATGGTGACACAAGGCATGTGGGATCGTGATTCTGT
TCTTTTACAACTTCCACATTTCACCAAGGAGTTGGCACGGAGATGTCAGGAGAATGAAGGGAGGCCCATTGAGAGCATCT
TTGATCTGGCTGAGATGAGCATCGATGAGATGCGGGATCTGTTGCAGCAATCAAACCCTCAGCTGCAGGATATCATTGAA
TTCTTCAAGCGTTTCCCCAATGTCGATATGGCTTACGAAGTTCGCGAGGGTGATGATATCAGGGCTGGTGACAATGTAAC
TGTACAGGTGACCCTGGAGCGTGACATGACGAACTTGCCTTCTGAGGTGGGGCCAGTTCATGCCCCCAGGTACCCAAAGC
CCAAGGAAGAAGGCTGGTGGCTGGTAATTGGTGATAGCTCTACCAATCAGTTGCTTGCAATCAAGAGGGTTGCACTTCAG
AAGAGGGCTCGAGTGAAGCGGGATCGGCATAACTGCAGGAACATACCATACCATAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24051.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis