Browse Element(s) Details


Os.20935.1.S1_at

Description gb:AK060675.1
DB_XREF= gi:32970693
TID=Os.20935.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A04, full insert sequence.
FL= gb:AK060675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g017209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01670NANA2+372104..376669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01679NANA2+376921..378263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690Os.35344.3.S1_x_at9/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690Os.35344.18.S1_x_at9/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690OsAffx.22940.5.S1_x_at3/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01690OsAffx.828.1.S1_x_at1/112+380163..383415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01700OsAffx.24050.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01700Os.55303.1.S1_at11/112+385738..386864hypothetical protein
LOC_Os02g01710Os.18186.1.S1_at11/112+391819..395616expressed protein
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20935.1.S1_at--612--9951Chr02:400592..400616 (25 bp)
TACCCGGTCCTTTTCACATTACAGG
LOC_Os02g01720
Os.20935.1.S1_at--980--10471Chr02:400886..400910 (25 bp)
TTACTTCTTAAGACGGCTTTGCACG
LOC_Os02g01720
Os.20935.1.S1_at--495--8571Chr02:403067..403091 (25 bp)
TGGTAATGGCAGTCGGCAACTTTGT
LOC_Os02g01720
Os.20935.1.S1_at--306--451Chr02:403163..403187 (25 bp)
ATCTCAGTCGCCAACACCAAAATTG
LOC_Os02g01720
Os.20935.1.S1_at--262--5811Chr02:403195..403219 (25 bp)
GACCCATAATGGTGACTCCATGCTT
LOC_Os02g01720
Os.20935.1.S1_at--528--371Chr02:403241..403265 (25 bp)
ACCATCTCTCTTGTAAATCCCTTAA
LOC_Os02g01720
Os.20935.1.S1_at--398--4331Chr02:403267..403291 (25 bp)
CCATAAACTGTTTTGGCTGCCCATG
LOC_Os02g01720
Os.20935.1.S1_at--262--10871Chr02:403279..403303 (25 bp)
TTGGCTGCCCATGATTTTGTGTTTT
LOC_Os02g01720
Os.20935.1.S1_at--43--6751Chr02:403324..403348 (25 bp)
GTTCATATTCTACGGTCAATGCACG
LOC_Os02g01720
Os.20935.1.S1_at--110--10071Chr02:403459..403483 (25 bp)
TAGTCAGTAGATTCCGTGGCTCTAA
NONE
Os.20935.1.S1_at--972--5911NONE
GAGCTAGTAACATGCTGCCCAATGA
NONE
Target Sequence 
TACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGC
ATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTT
TGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGA
CAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCC
ATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACG
ATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAA
ATTGCAGAGAACAATAATGTATTATGTCAGTAGTCAGTAGATTCCGTGGCTCTAATTGCAGAGAGCTAGTAACATGCTGC
CCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis