Browse Element(s) Details


Os.9094.1.S1_at

Description gb:AK067983.1
DB_XREF= gi:32978001
TID=Os.9094.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124E14, full insert sequence.
FL= gb:AK067983.1 gb:AK102128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0179011/11expressed protein
LOC_Os02g017707/11hypothetical protein
LOC_Os02g018701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9094.1.S1_at--1008--5092Chr02:435127..435151 (25 bp)
GCACGGGCAATGGTTTGGGCTCTCC
LOC_Os02g01790
Os.9094.1.S1_at--67--9132Chr02:435051..435075 (25 bp)
TGCTGTTCCTACGATGCGCAGGTGA
LOC_Os02g01790
Os.9094.1.S1_at--914--4512Chr02:434980..435004 (25 bp)
GCCGCCCAAGCGATCGTTACTGATG
LOC_Os02g01790
Os.9094.1.S1_at--834--1951Chr02:434962..434986 (25 bp)
ACTGATGGAGACCTATGCCGTGCAC
LOC_Os02g01790
Os.9094.1.S1_at--377--8072Chr02:434893..434917 (25 bp)
GGAGCAACACAACATCTCACTTCAT
LOC_Os02g01790
Os.9094.1.S1_at--1088--1433Chr02:483631..483655 (25 bp)
AGAACGACAGGTTCTTGCTGCTCAC
LOC_Os02g01870
Os.9094.1.S1_at--1001--2832Chr02:434769..434793 (25 bp)
AAGTCTATACGCTACGCATTCCAAA
LOC_Os02g01790
Os.9094.1.S1_at--280--192Chr02:434738..434762 (25 bp)
ATTTCGTTCGTGGTTACTCTCGAGT
LOC_Os02g01790
Os.9094.1.S1_at--978--6091Chr02:434717..434741 (25 bp)
GAGTCTTTTAATTTCATCATCCCCT
LOC_Os02g01790
Os.9094.1.S1_at--990--10471Chr02:434689..434713 (25 bp)
TTACTTATTACACCTCTCTAGTCTC
LOC_Os02g01790
Os.9094.1.S1_at--553--10293Chr02:492640..492664 (25 bp)
TTTCCTTTTCATTTCGAGCGAGATT
NONE
Target Sequence 
GCACGGGCAATGGTTTGGGCTCTCCTCCACGCCGAGGCTGGGGCTGTACCTCTGTTCCTGCGATCTCTCCTATCTCTGCT
GTTCCTACGATGCGCAGGTGATGGTCAGGTGCTGGTTGGATGGCCTAGACCGGCTGCCGGCGGCGGCGCCGCCCAAGCGA
TCGTTACTGATGGAGACCTATGCCGTGCACCTCGGCTCCGGTAGGTTCTGCATCGCCAGGTTCATGGAGGAGGAGGAGCA
ACACAACATCTCACTTCATCCATTCTTCCGCGTCGCCGGCGAAAAAANGCAAGAACGACAGGTTCTTGCTGCTCACCGGC
GTTGATGTGGTGGGCAGTGACGACGCCGTCGTCGTGCACAAGTCTATACGCTACGCATTCCAAAACGGTGATTTCGTTCG
TGGTTACTCTCGAGTCTTTTAATTTCATCATCCCCTAATTTACTTATTACACCTCTCTAGTCTCCGGTAAAACTAGCTAT
ATTTTGTTTTGTGACGGAGTGAGTATATCATTTATATATATCCCTTTTCCTTTTCATTTCGAGCGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis