Browse Element(s) Details


Os.52249.2.S1_x_at

Description gb:AK065886.1
DB_XREF= gi:32975904
TID=Os.52249.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043M07, full insert sequence.
FL= gb:AK065886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0183010/11expressed protein
LOC_Os12g225001/11expressed protein
LOC_Os07g170601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52249.2.S1_x_at--311--8291Chr02:459307..459331 (25 bp)
GGCTTCTTCCGCTTCGGGATTAGGG
LOC_Os02g01830
Os.52249.2.S1_x_at--714--1972Chr07:10039120..10039247 (24 bp)
ACTGCCGTCCGGCCCGACAAGGAGA
LOC_Os07g17060
Os.52249.2.S1_x_at--535--3791Chr02:458990..459014 (25 bp)
CTCGTCGGAGAAGCTCACCGGAGGT
LOC_Os02g01830
Os.52249.2.S1_x_at--226--3751Chr02:458978..459001 (24 bp)
CTCACCGGAGGTTGAGGCCGCGTCA
LOC_Os02g01830
Os.52249.2.S1_x_at--1099--10694Chr08:20419862..20419881 (20 bp)
TTGCCGCTTGCCGTCCTGGTCAGTG
NONE
Os.52249.2.S1_x_at--582--4012Chr03:12164068..12164092 (25 bp)
CGTCCTGGTCAGTGGCATGCGAGAA
NONE
Os.52249.2.S1_x_at--433--7493Chr03:12163978..12164001 (24 bp)
GTGGGACCCACAAACATGTATTGTG
NONE
Os.52249.2.S1_x_at--1116--3272Chr03:12163956..12163991 (25 bp)
CAAACATGTATTGTGCACTGTGAAG
NONE
Os.52249.2.S1_x_at--1012--2492Chr03:12163954..12163989 (25 bp)
AACATGTATTGTGCACTGTGAAGTG
NONE
Os.52249.2.S1_x_at--703--10232Chr03:12163948..12163983 (25 bp)
TATTGTGCACTGTGAAGTGTGGTTC
NONE
Os.52249.2.S1_x_at--156--1972Chr03:12163944..12163964 (21 bp)
ACTGTGAAGTGTGGTTCTTTACGGC
NONE
Target Sequence 
GGCTTCTTCCGCTTCGGGATTAGGGGAGTCGGCGCCGGCGGAGGGAGGAGGGGACAGCCGGCGCCACTCGGCCCCGAGGA
CGCCGCCGCCACAGGACCCGCTACCTCGCCATGCGCGCAGCCGTCCCACCGTCGAGGTCACTGCCGTCCGGCCCGACAAG
GAGAGGAGGGGGCGGGCGGTTCGCCGTCGTGCGCCGCCGTGGAGCCGAGTGAGGGAGGGCCTCGTCGTCGTCCACGCTCT
CCGCTCCGCGTCGCCGACCTCGGTGTCGCCGGGGAGCTCGTTGCCACGCCGCTTCGGTCCGCGCCGCCGCCACTGTCCTC
GTCGGAGAAGCTCACCGGAGGTTGAGGCCGCGTCAGAGCTCGCCGGCGTCTGTGCCTTCTTGCCCGCCGTCCTCGCCCTT
GCCGCTTGCCGTCCTGGTCAGTGGCATGCGAGAAGAATGGATAGAGATAGAGAGGGAGAGATGAATGTGAAAAGAGAGAT
GGTGGGACCTACTAACATGGGTGGGACCCACAAACATGTATTGTGCACTGTGAAGTGTGGTTCTTTACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52249.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis