Browse Element(s) Details


OsAffx.31566.2.S1_at

Description tigr:9630.m00085
TID=OsAffx.31566.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g036609/11transposon protein, putative, unclassified
LOC_Os02g018609/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed
LOC_Os12g03610OsAffx.7475.1.S1_at11/1112+1448383..1449226hypothetical protein
LOC_Os12g03619NANA12+1449724..1450048NA
LOC_Os12g03630Os.57387.1.S1_at11/1112+1451167..1455276expressed protein
LOC_Os12g03630OsAffx.24436.1.S1_at10/1112+1451167..1455276expressed protein
LOC_Os12g03640Os.17338.1.S1_at9/1112+1456297..1458940Protein kinase domain containing protein, expressed
LOC_Os12g03650NANA12+1461306..1463813D-mannose binding lectin family protein
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31566.2.S1_at--658--4552Chr12:1468215..1468319 (25 bp)
GCCCAACTTCTACTGGGTTCTATTG
LOC_Os12g03660
OsAffx.31566.2.S1_at--612--4172Chr12:1468214..1468318 (25 bp)
CCCAACTTCTACTGGGTTCTATTGA
LOC_Os12g03660
OsAffx.31566.2.S1_at--628--4372Chr12:1468213..1468317 (25 bp)
CCAACTTCTACTGGGTTCTATTGAC
LOC_Os12g03660
OsAffx.31566.2.S1_at--1053--3252Chr12:1468212..1468316 (25 bp)
CAACTTCTACTGGGTTCTATTGACG
LOC_Os12g03660
OsAffx.31566.2.S1_at--176--2532Chr12:1468211..1468315 (25 bp)
AACTTCTACTGGGTTCTATTGACGT
LOC_Os12g03660
OsAffx.31566.2.S1_at--864--2052Chr12:1468210..1468314 (25 bp)
ACTTCTACTGGGTTCTATTGACGTT
LOC_Os12g03660
OsAffx.31566.2.S1_at--512--3652Chr12:1468209..1468313 (25 bp)
CTTCTACTGGGTTCTATTGACGTTG
LOC_Os12g03660
OsAffx.31566.2.S1_at--503--10552Chr12:1468208..1468312 (25 bp)
TTCTACTGGGTTCTATTGACGTTGA
LOC_Os12g03660
OsAffx.31566.2.S1_at--634--9532Chr12:1468207..1468311 (25 bp)
TCTACTGGGTTCTATTGACGTTGAA
LOC_Os12g03660
Target Sequence 
GCCCAACTTCTACTGGGTTCTATTGACGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31566.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis