Browse Element(s) Details


OsAffx.18656.1.S1_at

Description tigr:9639.m00296
TID=OsAffx.18656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0387011/11hypothetical protein
LOC_Os12g036602/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03840Os.50555.1.S1_at1/1111+1521292..1523817D-mannose binding lectin family protein
LOC_Os11g03850NANA11+1533949..1534785pentatricopeptide, putative
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18656.1.S1_at--90--2411Chr11:1542559..1542583 (25 bp)
AAAAAGACATTCACATTGCTGCCAA
LOC_Os11g03870
OsAffx.18656.1.S1_at--1068--5671Chr11:1542564..1542588 (25 bp)
GACATTCACATTGCTGCCAAACAGT
LOC_Os11g03870
OsAffx.18656.1.S1_at--111--131Chr11:1542567..1542591 (25 bp)
ATTCACATTGCTGCCAAACAGTGGA
LOC_Os11g03870
OsAffx.18656.1.S1_at--422--71Chr11:1542573..1542597 (25 bp)
ATTGCTGCCAAACAGTGGAGAGCGC
LOC_Os11g03870
OsAffx.18656.1.S1_at--510--2391Chr11:1542582..1542606 (25 bp)
AAACAGTGGAGAGCGCAGATATCAA
LOC_Os11g03870
OsAffx.18656.1.S1_at--65--6011Chr11:1542590..1542614 (25 bp)
GAGAGCGCAGATATCAATTGCATCT
LOC_Os11g03870
OsAffx.18656.1.S1_at--973--1252Chr11:1542598..1542622 (25 bp)
AGATATCAATTGCATCTGTCGCACA
LOC_Os11g03870
OsAffx.18656.1.S1_at--259--492Chr11:1542611..1542635 (25 bp)
ATCTGTCGCACATTTACAGCAGCGG
LOC_Os11g03870
OsAffx.18656.1.S1_at--816--8711Chr11:1542614..1542638 (25 bp)
TGTCGCACATTTACAGCAGCGGACA
LOC_Os11g03870
OsAffx.18656.1.S1_at--1061--7871Chr11:1542664..1542688 (25 bp)
GGTTAACGTTGCAAAAGAATGTGGC
LOC_Os11g03870
OsAffx.18656.1.S1_at--1148--4071Chr11:1542855..1542878 (24 bp)
CGCAGGTTACCGTGTTCCCCTGCTT
LOC_Os11g03870
Target Sequence 
AAAAAGACATTCACATTGCTGCCAAACAGTGGAGAGCGCAGATATCAATTGCATCTGTCGCACATTTACAGCAGCGGACA
AGGCTAAAATTGCTTTGTCAAAGTGGGTTAACGTTGCAAAAGAATGTGGCAATCCGTTACACGCAGGGACTAACTGCGCA
GGTTACCGTGTTCCCCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis