Browse Element(s) Details


Os.24473.1.A1_s_at

Description gb:CA761881
DB_XREF= gi:25805920
DB_XREF=BR060013B11H09.ab1
CLONE=BR060013B11H09.ab1
TID=Os.24473.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24473 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47753 (A.thaliana) T47753 hypothetical protein F24I3.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0391011/11zinc finger family protein, putative, expressed
LOC_Os12g0373011/11zinc finger family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24473.1.A1_s_at--409--5412Chr12:1509074..1509098 (25 bp)
GAAGCTGGATTTTATACTCCATATA
LOC_Os12g03730
Os.24473.1.A1_s_at--902--10372Chr12:1509083..1509107 (25 bp)
TTTTATACTCCATATATTGCGCTGG
LOC_Os12g03730
Os.24473.1.A1_s_at--692--232Chr12:1509094..1509118 (25 bp)
ATATATTGCGCTGGATTTGACTGAT
LOC_Os12g03730
Os.24473.1.A1_s_at--1086--10692Chr12:1509099..1509123 (25 bp)
TTGCGCTGGATTTGACTGATCCAAG
LOC_Os12g03730
Os.24473.1.A1_s_at--562--3432Chr12:1509176..1509200 (25 bp)
CAGATCCCAACAGTGCTTCAGAACA
LOC_Os12g03730
Os.24473.1.A1_s_at--487--2132Chr12:1509185..1509209 (25 bp)
ACAGTGCTTCAGAACATAGACTATG
LOC_Os12g03730
Os.24473.1.A1_s_at--255--1432Chr12:1509195..1509219 (25 bp)
AGAACATAGACTATGGTTCCTTTGA
LOC_Os12g03730
Os.24473.1.A1_s_at--585--6292Chr12:1509251..1509275 (25 bp)
GATGATAGACTAGTGCCTTTTGCTT
LOC_Os12g03730
Os.24473.1.A1_s_at--672--5132Chr12:1509293..1509317 (25 bp)
GCAAATGAAGGTGCTCGAACATCTG
LOC_Os12g03730
Os.24473.1.A1_s_at--949--5312Chr12:1509299..1509323 (25 bp)
GAAGGTGCTCGAACATCTGAAATAG
LOC_Os12g03730
Os.24473.1.A1_s_at--169--3792Chr12:1509306..1509330 (25 bp)
CTCGAACATCTGAAATAGCTACTGT
LOC_Os12g03730
Target Sequence 
GAAGCTGGATTTTATACTCCATATATTGCGCTGGATTTGACTGATCCAAGGGNAAAGATTGATTNAGAGATGGGAAACAA
GGATATACTNGTNGGGGGTATNCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATG
NCAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGNACAACAAGCAAATGAAGGTGCTCGAACA
TCTGAAATAGCTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24473.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis