Browse Element(s) Details


Os.50822.1.S1_at

Description gb:AK058784.1
DB_XREF= gi:32968802
TID=Os.50822.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-D09, full insert sequence.
FL= gb:AK058784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0390011/11glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os12g037205/11SIS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03850NANA11+1533949..1534785pentatricopeptide, putative
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50822.1.S1_at--1043--7591Chr11:1555994..1556018 (25 bp)
GGGAAGCCGAAAGAATTATTCTTCT
LOC_Os11g03900
Os.50822.1.S1_at--661--5212Chr12:1501722..1501746 (25 bp)
GAATTATTCTTCTCTAGTGATTTAT
LOC_Os12g03720
Os.50822.1.S1_at--86--1112Chr12:1501707..1501731 (25 bp)
AGTGATTTATTTGCTATTGTGGAGC
LOC_Os12g03720
Os.50822.1.S1_at--1138--4872Chr12:1501695..1501719 (25 bp)
GCTATTGTGGAGCATACCAAGAATT
LOC_Os12g03720
Os.50822.1.S1_at--53--3151Chr11:1555604..1555932 (25 bp)
AATTGTTCATATTAAGGACGGCAGT
LOC_Os11g03900
Os.50822.1.S1_at--904--1931Chr11:1555587..1555611 (25 bp)
ACGGCAGTGTGTCGATCCTTAAGTT
LOC_Os11g03900
Os.50822.1.S1_at--670--4051Chr11:1555575..1555599 (25 bp)
CGATCCTTAAGTTTGACCATGAGAA
LOC_Os11g03900
Os.50822.1.S1_at--105--1451Chr11:1555548..1555572 (25 bp)
AGAAGCCAGCTTCTGTTCAACGAGC
LOC_Os11g03900
Os.50822.1.S1_at--489--8791Chr11:1555535..1555559 (25 bp)
TGTTCAACGAGCATTGTCTGTCCTT
LOC_Os11g03900
Os.50822.1.S1_at--1019--3252Chr12:1501271..1501295 (25 bp)
CAACGAGCATTGTCTGTCCTTGAGA
LOC_Os12g03720
Os.50822.1.S1_at--234--1412Chr12:1501228..1501252 (25 bp)
AGAAAGGAAGTTATGACCACTTCAT
LOC_Os12g03720
Target Sequence 
GGGAAGCCGAAAGAATTATTCTTCTCTAGTGATTTATTTGCTATTGTGGAGCATACCAAGAATTATTTGGCTATCGAAGA
TGATGAAATTGTTCATATTAAGGACGGCAGTGTGTCGATCCTTAAGTTTGACCATGAGAAAGAGAAGCCAGCTTCTGTTC
AACGAGCATTGTCTGTCCTTGAGATGGAAGTTGAGCAGATAAAGAAAGGAAGTTATGACCACTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis