Browse Element(s) Details


OsAffx.7477.1.S1_at

Description tigr:9640.m00293
TID=OsAffx.7477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F21M12.27 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0379011/11LG27/30-like gene, putative, expressed
LOC_Os11g039403/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7477.1.S1_at--87--6712Chr12:1541537..1541561 (25 bp)
GTTCCTGACAGGAGTGCAGCAGAGT
LOC_Os12g03790
OsAffx.7477.1.S1_at--94--3412Chr12:1541521..1541545 (25 bp)
CAGCAGAGTTCTTCATCCCTGATCC
LOC_Os12g03790
OsAffx.7477.1.S1_at--1015--1011Chr12:1541429..1541453 (25 bp)
AGGTACGCTGAGCTATACCCTGACG
LOC_Os12g03790
OsAffx.7477.1.S1_at--833--5871Chr12:1541379..1541403 (25 bp)
GAGCGACATCTCCAAGGACTGGTTC
LOC_Os12g03790
OsAffx.7477.1.S1_at--952--7891Chr12:1541362..1541383 (22 bp)
GGTTCTTCGCACACGTCACAAGAAA
LOC_Os12g03790
OsAffx.7477.1.S1_at--136--1871Chr12:1541197..1541221 (25 bp)
ACGACGAGGCAGATCCGGTTCAGGC
LOC_Os12g03790
OsAffx.7477.1.S1_at--38--1091Chr12:1541004..1541028 (25 bp)
AGTGGAGCTTGGAGTTCGCGATCAA
LOC_Os12g03790
OsAffx.7477.1.S1_at--76--2991Chr12:1540948..1540972 (25 bp)
AATGTGGTGTTCATCACGCAGACGA
LOC_Os12g03790
OsAffx.7477.1.S1_at--633--1392Chr12:1540929..1540953 (25 bp)
AGACGAGGGCGTTGAGCCCCTTCTT
LOC_Os12g03790
OsAffx.7477.1.S1_at--180--10571Chr12:1540909..1540933 (25 bp)
TTCTTCGGCGTCATGTATGATTACA
LOC_Os12g03790
OsAffx.7477.1.S1_at--615--10471Chr12:1540889..1540913 (25 bp)
TTACATCCGGTTAGAGGGTCCTTCT
LOC_Os12g03790
Target Sequence 
GTTCCTGACAGGAGTGCAGCAGAGTTCTTCATCCCTGATCCCAACCCCAAATACCTGAACAAGATCTTCATCACCAAAGA
CAAGTACAGGCAGTACGGGTTGTGGGAGAGGTACGCTGAGCTATACCCTGACGGCGATCTCGTCTTCACGATCGGCGAGA
GCGACATCTCCAAGGACTGGTTCTTCGCACACGTCACAAGAAAGCAAGGCGACGGGTATGCGGCGACGACGAGGCAGATC
CGGTTCAGGCTGGAGCGCGTCGTGGCGGACGCCACCTACACGCTCCGCGTCGAGCTGGCGGCGGCGCAGATGGCGAGGGT
GCAGGTGGTGGTGAACGGCCGGGCGGACGAGGCGTTGACGACGGCGGCGGCGTTCGGCGACGGGAACGCGATAGCGCGGC
ACGGGGCACACGGCGTGCAGTGGAGCTTGGAGTTCGCGATCAAGGGGTACATGCTGGTGGAGGGAGAGGAGGAGAATGTG
GTGTTCATCACGCAGACGAGGGCGTTGAGCCCCTTCTTCGGCGTCATGTATGATTACATCCGGTTAGAGGGTCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis