Browse Element(s) Details


OsAffx.19473.1.S1_s_at

Description tigr:9640.m00288
TID=OsAffx.19473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable phloem-specific lectin (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0374011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19473.1.S1_s_at--306--5991Chr12:1513991..1514015 (25 bp)
GAGACAGTGAGCTATCCGAGAGAAC
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--167--8211Chr12:1513910..1513934 (25 bp)
GGAATGGTTGTTATCAACCTGCAAG
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--603--2631Chr12:1513895..1513919 (25 bp)
AACCTGCAAGAGATCGTCCAGCTCA
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--811--6391Chr12:1513884..1513908 (25 bp)
GATCGTCCAGCTCAACTCGAAGAAA
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--1105--3811Chr12:1513867..1513891 (25 bp)
CGAAGAAAGGACTTATCCTCGAGGG
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--334--5591Chr12:1513838..1513862 (25 bp)
GAAATTAGACACAGCATTGGTCCTT
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--184--5631Chr12:1513831..1513855 (25 bp)
GACACAGCATTGGTCCTTAAGGAAG
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--60--2331Chr12:1513739..1513763 (25 bp)
AAAGAGGAGTCATGATACAGCCAGC
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--139--7071Chr12:1513713..1513737 (25 bp)
GTAAGTGATCAGTTGCCGCTCCTAA
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--958--2831Chr12:1513635..1513659 (25 bp)
AAGTATGCCAACTTCATCTTCTCTT
LOC_Os12g03740
OsAffx.19473.1.S1_s_at--583--4372Chr12:1513628..1513652 (25 bp)
CCAACTTCATCTTCTCTTTCAAGTT
LOC_Os12g03740
Target Sequence 
GAGACAGTGAGCTATCCGAGAGAACGGGGTGACGGCTGGATGGAGGTACAACTGGGGCACTTCTACAACCACCAAGGAGA
TGGAATGGTTGTTATCAACCTGCAAGAGATCGTCCAGCTCAACTCGAAGAAAGGACTTATCCTCGAGGGTATGGAAATTA
GACACAGCATTGGTCCTTAAGGAAGAACTGAAAAATGGAGCAAGTATGTTAATTAGAAGACAAAATTAAATAATGCAGTG
TTGAATATGCACAAAGAGGAGTCATGATACAGCCAGCGGTAAGTGATCAGTTGCCGCTCCTAAGCCAATGAACCAGTACC
AATAAATTGATTGGAACAATTTAAATTCAACTTTGGAAGTATGCCAACTTCATCTTCTCTTTCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19473.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis