Browse Element(s) Details


Os.57501.1.S1_at

Description gb:AF059754.1
DB_XREF= gi:3075515
TID=Os.57501.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57501 (NCBI UniGene Cluster)
UG_TITLE=Clone Osr1 putative resistance protein mRNA, partial cds
DEF=Oryza sativa putative resistance protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g037501/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57501.1.S1_at--1083--5931NONE
GAGCACGCTGCTGACAGCATTATCT
NONE
Os.57501.1.S1_at--805--4131NONE
CGCTGCTGACAGCATTATCTGATGA
NONE
Os.57501.1.S1_at--254--8871NONE
TGATGAGGCACGTCAGCATGGCAGT
NONE
Os.57501.1.S1_at--477--1531NONE
AGCATGGCAGTGTTCTCCTTATCAC
NONE
Os.57501.1.S1_at--916--10411NONE
TTATCACCACACAGAGCCAAAGAGT
NONE
Os.57501.1.S1_at--688--5851NONE
GAGCCAAAGAGTTGCACAAATTGTT
NONE
Os.57501.1.S1_at--420--8811Chr12:1523495..1523515 (21 bp)
TGTTGCCACGATTTATCCCATAAAT
LOC_Os12g03750
Os.57501.1.S1_at--125--3571NONE
CATAAATCTGAAAGCATTGCCGTGG
NONE
Os.57501.1.S1_at--540--9471NONE
TCTGAAAGCATTGCCGTGGGAGATC
NONE
Os.57501.1.S1_at--38--6051NONE
GAGATCTTCTGGCAGCTTTTTCAGA
NONE
Os.57501.1.S1_at--372--1551NONE
AGCTTTTTCAGAACCACGCGTTTGG
NONE
Target Sequence 
GAGCACGCTGCTGACAGCATTATCTGATGAGGCACGTCAGCATGGCAGTGTTCTCCTTATCACCACACAGAGCCAAAGAG
TTGCACAAATTGTTGCCACGATTTATCCCATAAATCTGAAAGCATTGCCGTGGGAGATCTTCTGGCAGCTTTTTCAGAAC
CACGCGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis