Browse Element(s) Details


OsAffx.18657.1.S1_at

Description tigr:9640.m00287
TID=OsAffx.18657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL138655 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0373011/11zinc finger family protein, putative
LOC_Os11g037942/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18657.1.S1_at--418--5792Chr12:1510645..1510669 (25 bp)
GACGAACTCGCGGAAGTGCTTCTTG
LOC_Os12g03730
OsAffx.18657.1.S1_at--146--4651Chr12:1511983..1512007 (25 bp)
GCGTTTGTGATATCGTGGGCCTCAA
LOC_Os12g03730
OsAffx.18657.1.S1_at--417--4911Chr12:1512043..1512067 (25 bp)
GCTTCCCATATAATTTTGGCCCGGA
LOC_Os12g03730
OsAffx.18657.1.S1_at--343--5473Chr12:1512066..1512090 (25 bp)
GAACTCCAATTCCATCACATACAAT
LOC_Os12g03730
OsAffx.18657.1.S1_at--470--252Chr12:1512089..1512581 (25 bp)
ATATCGGCCCAGGAATGGTCTTCAG
LOC_Os12g03730
OsAffx.18657.1.S1_at--275--2411Chr12:1512697..1512721 (25 bp)
AAACAAATGCTATTCCCTTCTTGCG
LOC_Os12g03730
OsAffx.18657.1.S1_at--174--3771Chr12:1512871..1512895 (25 bp)
CTCTGGTCAGCGTCATATCATGACA
LOC_Os12g03730
OsAffx.18657.1.S1_at--665--7351Chr12:1512907..1512931 (25 bp)
GTGAAATCTGGTACCTTTCCTAGAG
LOC_Os12g03730
OsAffx.18657.1.S1_at--1132--3691Chr12:1512926..1512950 (25 bp)
CTAGAGGTTCTAGTGGCCAAGGGAT
LOC_Os12g03730
OsAffx.18657.1.S1_at--1122--7651Chr12:1512946..1512970 (25 bp)
GGGATGCTTGTGGACATTCTCTATT
LOC_Os12g03730
OsAffx.18657.1.S1_at--801--111Chr12:1512961..1512985 (25 bp)
ATTCTCTATTGTTCTTCTGCTGAAG
LOC_Os12g03730
Target Sequence 
GACGAACTCGCGGAAGTGCTTCTTGGAGTCCCCCCGCCGACGTGCTTCTGCACCGCCTTGAGCACCCGCCGCACGCCTGA
TGATGCGTTTGTGATATCGTGGGCCTCAACCAGGTGCCAGCACTCCCGTCCTGAGGCCATCGACGCTTCCCATATAATTT
TGGCCCGGAACTCCAATTCCATCACATACAATATCGGCCCAGGAATGGTCTTCAGCCCGATTCCTTTCCAGCCGGATGCG
ATTGTTGCCACCCACGAGCCTCCTGCTGTCACTGAAGCTGCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCGTAGC
TGAGTCCTTCAAACAAATGCTATTCCCTTCTTGCGATGGAGGAATATGCCTCTGGTCAGCGTCATATCATGACAATGTTG
CATTTGTGAAATCTGGTACCTTTCCTAGAGGTTCTAGTGGCCAAGGGATGCTTGTGGACATTCTCTATTGTTCTTCTGCT
GAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis