Browse Element(s) Details


OsAffx.12164.1.S1_at

Description tigr:9630.m02220
TID=OsAffx.12164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2393011/11expressed protein
LOC_Os12g037501/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein
LOC_Os02g23920OsAffx.24397.1.S1_at11/112+13855114..13855485hypothetical protein
LOC_Os02g23930OsAffx.12164.1.S1_at11/112+13856434..13858652expressed protein
LOC_Os02g23940OsAffx.2720.1.S1_x_at11/112+13859853..13861452hypothetical protein
LOC_Os02g23940OsAffx.2720.1.S1_at10/112+13859853..13861452hypothetical protein
LOC_Os02g23950NANA2+13870417..13871329transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12164.1.S1_at--88--6834Chr08:14020014..14020038 (25 bp)
GTTTATGCCAGCCAATGGTCCAAAT
NONE
OsAffx.12164.1.S1_at--828--8594Chr08:14020029..14020053 (25 bp)
TGGTCCAAATCTCTCATGTCTGAAA
NONE
OsAffx.12164.1.S1_at--791--234Chr12:1524421..1524445 (25 bp)
ATATTTCACGCATAGACTTAGAGAG
LOC_Os12g03750
OsAffx.12164.1.S1_at--568--6071Chr02:13856623..13856647 (25 bp)
GAGTTCACCTTATATTCTGATCTGC
LOC_Os02g23930
OsAffx.12164.1.S1_at--869--3891Chr02:13856883..13856907 (25 bp)
CTGGGACTGTGGCATCATTGGTATT
LOC_Os02g23930
OsAffx.12164.1.S1_at--490--31Chr02:13856899..13856923 (25 bp)
ATTGGTATTATGTGGTGCTGAAGCT
LOC_Os02g23930
OsAffx.12164.1.S1_at--528--1091Chr02:13857009..13857033 (25 bp)
AGTGATGGACAAGCTGTTGACCCTC
LOC_Os02g23930
OsAffx.12164.1.S1_at--988--2211Chr02:13857017..13857041 (25 bp)
ACAAGCTGTTGACCCTCGATATGAA
LOC_Os02g23930
OsAffx.12164.1.S1_at--506--5131Chr02:13857073..13857097 (25 bp)
GCAAATTGGCAATAGCACGCTACTG
LOC_Os02g23930
OsAffx.12164.1.S1_at--1153--4711Chr02:13857385..13857409 (25 bp)
GCTGAGGGCCCAGCTTTGATACCAA
LOC_Os02g23930
OsAffx.12164.1.S1_at--766--8832Chr10:6659407..6659427 (21 bp)
TGATACCAAATGATACATCCGCCCC
NONE
Target Sequence 
GTTTATGCCAGCCAATGGTCCAAATCTCTCATGTCTGAAAGTAATCAAGTGCAAAATATTATGTAGCATCAAATTCTCAT
ATATTTCACGCATAGACTTAGAGAGAAACGAGTTCACCTTATATTCTGATCTGCAAGTAAAGAACAATGTACTTTTGATA
GTTGGAGCTGGGACTGTGGCATCATTGGTATTATGTGGTGCTGAAGCTGAATCGGTGGTGGTGTTTGCTGATGATGCTGC
GGTGGTGAGGTGGTACAGTGATGGACAAGCTGTTGACCCTCGATATGAAGGAGATGACGACGGCGGCGGCACAGGAGATG
GCAAATTGGCAATAGCACGCTACTGGGCCCAGGTGGGGTTGGCTGAGGGCCCAGCTTTGATACCAAATGATACATCCGCC
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis