Browse Element(s) Details


OsAffx.2720.1.S1_x_at

Description tigr:9630.m02221
TID=OsAffx.2720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein
LOC_Os02g23920OsAffx.24397.1.S1_at11/112+13855114..13855485hypothetical protein
LOC_Os02g23930OsAffx.12164.1.S1_at11/112+13856434..13858652expressed protein
LOC_Os02g23940OsAffx.2720.1.S1_x_at11/112+13859853..13861452hypothetical protein
LOC_Os02g23940OsAffx.2720.1.S1_at10/112+13859853..13861452hypothetical protein
LOC_Os02g23950NANA2+13870417..13871329transposon protein, putative, Pong sub-class, expressed
LOC_Os02g23960NANA2+13884583..13885697hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2720.1.S1_x_at--337--9371Chr02:13861398..13861422 (25 bp)
TCGACGACGATTTGTGAGCGACGAC
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--71--4171Chr02:13861331..13861355 (25 bp)
CGCCTATCTGGATGCTGGTGCGAGC
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--734--6691Chr02:13861300..13861324 (25 bp)
GTTCGTTCCCATCGATCCGGCGGCG
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--650--471Chr02:13861193..13861217 (25 bp)
ATGCGGTTTCCGTGGGATTGGGATA
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--946--11Chr02:13861177..13861201 (25 bp)
ATTGGGATATGGGAGCGGTGCGGCG
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--348--91Chr02:13861152..13861176 (25 bp)
ATTCCGTGGGATGGGAGCGACGCGC
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--771--2291Chr02:13860290..13860314 (25 bp)
AAATGGCCCATGTTCCTACAGAGAA
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--35--10411Chr02:13860045..13860069 (25 bp)
TTTTGGAGAATGGAATTGTCGAGCT
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--366--7651Chr02:13859907..13859931 (25 bp)
GGGAGGCAATGTCCATTGTGTTCAA
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--370--5191Chr02:13859902..13859926 (25 bp)
GCAATGTCCATTGTGTTCAAGCAGA
LOC_Os02g23940
OsAffx.2720.1.S1_x_at--838--3591Chr02:13859894..13859918 (25 bp)
CATTGTGTTCAAGCAGAAGGCACGA
LOC_Os02g23940
Target Sequence 
TCGACGACGATTTGTGAGCGACGACGGCGAATCGTGGGCGGCGGCGCAGAGGAGATCGGTGAGGCGGCGCCTATCTGGAT
GCTGGTGCGAGCGCGGGGGTTCGTTCCCATCGATCCGGCGGCGGCGCAGGTGGAGCTGCTGCGGGGGGTTTGGGATTGGG
GGTCGGCGCGACGCGGGGAGAGCGAGGGTGCGGCGATGATGGCGGATGCGGTTTCCGTGGGATTGGGATATGGGAGCGGT
GCGGCGATTCCGTGGGATGGGAGCGACGCGCGGTGGGAGGTCAGGGAGCGAAATGGCCCATGTTCCTACAGAGAACAAAT
ACAAGAAGATTTTGGAGAATGGAATTGTCGAGCTGTGAAGTCCATGAAGGCAGAGGTTCCAGATTTGGTCTGTACAGAAG
GATTCATCTCAACACAGTGCAAATTAGGAGTCAAAAAAAACATCATGACAGAATACCTGTTCAAGTGGGGAGGCAATGTC
CATTGTGTTCAAGCAGAAGGCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2720.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis