Browse Element(s) Details


Os.27496.1.S1_at

Description gb:AK102414.1
DB_XREF= gi:32987623
TID=Os.27496.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093B11, full insert sequence.
FL= gb:AK060832.1 gb:AK102414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2389011/11Translocation protein Sec62 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23860NANA2+13809053..13810425hypothetical protein
LOC_Os02g23870Os.27140.1.S1_a_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S1_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S2_at8/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.30316.1.S1_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.10048.1.S1_x_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23880OsAffx.2719.1.S1_at11/112+13827699..13828785hypothetical protein
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein
LOC_Os02g23920OsAffx.24397.1.S1_at11/112+13855114..13855485hypothetical protein
LOC_Os02g23930OsAffx.12164.1.S1_at11/112+13856434..13858652expressed protein
LOC_Os02g23940OsAffx.2720.1.S1_x_at11/112+13859853..13861452hypothetical protein
LOC_Os02g23940OsAffx.2720.1.S1_at10/112+13859853..13861452hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27496.1.S1_at--168--8571Chr02:13834881..13834905 (25 bp)
TGGTAATTTGGAGTACTTACCCTCG
LOC_Os02g23890
Os.27496.1.S1_at--996--2812Chr11:1968460..1968652 (25 bp)
AAGTTCAAATTCAGGGTGCTCATGT
NONE
Os.27496.1.S1_at--886--7771Chr02:13834804..13834828 (25 bp)
GGTGCTCATGTTTTGACCATGTTTC
LOC_Os02g23890
Os.27496.1.S1_at--736--6831Chr02:13834784..13834808 (25 bp)
GTTTCATTCACATATTGCCAGCAAT
LOC_Os02g23890
Os.27496.1.S1_at--525--4351Chr02:13834767..13834791 (25 bp)
CCAGCAATGGCTGTATTACGAGGTT
LOC_Os02g23890
Os.27496.1.S1_at--266--9711Chr02:13834741..13834765 (25 bp)
TCAAAGCATATTTTCGCATGGCTAT
LOC_Os02g23890
Os.27496.1.S1_at--90--10311Chr02:13834730..13834754 (25 bp)
TTTCGCATGGCTATGATGTAAACGT
LOC_Os02g23890
Os.27496.1.S1_at--275--751Chr02:13834715..13834739 (25 bp)
ATGTAAACGTGCCTCGAGTTTGCCC
LOC_Os02g23890
Os.27496.1.S1_at--1141--9371Chr02:13834702..13834726 (25 bp)
TCGAGTTTGCCCGAGTTGAGAGGTT
LOC_Os02g23890
Os.27496.1.S1_at--465--5951Chr02:13834677..13834701 (25 bp)
GAGAATGCAATGTGTCCGTGTCCGT
LOC_Os02g23890
Os.27496.1.S1_at--624--3191Chr02:13834670..13834694 (25 bp)
CAATGTGTCCGTGTCCGTGCGTGTG
LOC_Os02g23890
Target Sequence 
TGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGT
GCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTNTCAAAGCATATTTTCGCATG
GCTATGATGTAAACGTGCCTCGAGTTTGCCCGAGTTGAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTGCGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis