Browse Element(s) Details


Os.27140.1.S1_a_at

Description gb:AK068125.1
DB_XREF= gi:32978143
TID=Os.27140.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132L03, full insert sequence.
FL= gb:AK068125.1 gb:AK099575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2387011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g6191011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g2008010/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g4311010/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23840Os.45173.1.S1_x_at3/112+13790991..13797623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g23840Os.26446.1.S1_at1/112+13790991..13797623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g23850NANA2+13800013..13801166hypothetical protein
LOC_Os02g23860NANA2+13809053..13810425hypothetical protein
LOC_Os02g23870Os.27140.1.S1_a_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S1_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S2_at8/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.30316.1.S1_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.10048.1.S1_x_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23880OsAffx.2719.1.S1_at11/112+13827699..13828785hypothetical protein
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27140.1.S1_a_at--25--4774Chr08:27123552..27123576 (25 bp)
GCTGCATATGGCATCGACACCAATT
LOC_Os08g43110
Os.27140.1.S1_a_at--1087--2154Chr08:27123568..27123592 (25 bp)
ACACCAATTGGTACCTCGACACAGG
LOC_Os08g43110
Os.27140.1.S1_a_at--47--8074Chr08:27123654..27123678 (25 bp)
GGAGACAAGATTCACACCGCAAGCG
LOC_Os08g43110
Os.27140.1.S1_a_at--208--5872Chr02:13820488..13820512 (25 bp)
GAGCCACGAGGAACACGATTCTTAA
LOC_Os02g23870
Os.27140.1.S1_a_at--388--9874Chr08:27123920..27123944 (25 bp)
TACATCACCTGCCAAGCAAGTCCAT
LOC_Os08g43110
Os.27140.1.S1_a_at--720--8234Chr08:27123973..27123997 (25 bp)
GGCATAGTCGTTTGGGACACCCAGC
LOC_Os08g43110
Os.27140.1.S1_a_at--1003--1674Chr08:27123995..27124019 (25 bp)
AGCCGTGCCCATAGTCACTAGAGTT
LOC_Os08g43110
Os.27140.1.S1_a_at--1105--9734Chr08:27124031..27124055 (25 bp)
TAATTTACCTTGTTCTACCGTAGCA
LOC_Os08g43110
Os.27140.1.S1_a_at--172--2435Chr08:27124084..27124108 (25 bp)
AAAAGGGCAAGAGTCATCAGCTTCC
LOC_Os08g43110
Os.27140.1.S1_a_at--648--1554Chr08:27124102..27124126 (25 bp)
AGCTTCCCTATCCTAAGTCTTCAAG
LOC_Os08g43110
Os.27140.1.S1_a_at--566--2874Chr08:27124124..27124148 (25 bp)
AAGTGTGTCAAGTCAACCTCTAGAA
LOC_Os08g43110
Target Sequence 
GCTGCATATGGCATCGACACCAATTGGTACCTCGACACAGGGGCAACCGACCACATCACCAACGAACTCGACAAGTTAGA
TGTTCGGGAGAAGTACAAGGGAGGAGACAAGATTCACACCGCAAGCGGTGCAGGATCGAGCCACGAGGAACACGATTCTT
AAGGGGAGATGCCGCCGTCGCCTCTACTCCCTTCCTACATCACCTGCCAAGCAAGTCCATGCCGCCACAACTCCTTCCTT
CTCCCGATGGCATAGTCGTTTGGGACACCCAGCCGTGCCCATAGTCACTAGAGTTCTTAGCAAGAATAATTTACCTTGTT
CTACCGTAGCAAATAAAGACTCAATTTGTGATGCCTGTCAAAAGGGCAAGAGTCATCAGCTTCCCTATCCTAAGTCTTCA
AGTGTGTCAAGTCAACCTCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27140.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis