Browse Element(s) Details


Os.27140.2.S1_at

Description gb:AK072401.1
DB_XREF= gi:32982424
TID=Os.27140.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077K12, full insert sequence.
FL= gb:AK072401.1 gb:AK119307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4311011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g2008011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g2387011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein
LOC_Os08g43110Os.27140.2.S1_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.2.S2_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.1.S1_a_at10/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110OsAffx.10048.1.S1_x_at1/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27140.2.S1_at--950--9214Chr08:27125223..27125247 (25 bp)
TCCACATCGCCATCTGTTGCATCAT
LOC_Os08g43110
Os.27140.2.S1_at--1125--10714Chr08:27125239..27125263 (25 bp)
TTGCATCATCGGCTGGCGTGCATGA
LOC_Os08g43110
Os.27140.2.S1_at--751--4654Chr08:27125254..27125278 (25 bp)
GCGTGCATGATGATGTGACTACTGA
LOC_Os08g43110
Os.27140.2.S1_at--395--6454Chr08:27125286..27125310 (25 bp)
GATCAAACTGATCAGGCCATGCCAG
LOC_Os08g43110
Os.27140.2.S1_at--162--6674Chr08:27125319..27125343 (25 bp)
GTTGCACCGATCAGACCAAAAACAC
LOC_Os08g43110
Os.27140.2.S1_at--1154--2394Chr08:27125338..27125362 (25 bp)
AAACACGTCTCCAAAGCGGGATCAG
LOC_Os08g43110
Os.27140.2.S1_at--363--8314Chr08:27125398..27125422 (25 bp)
GGCTAAATTTTACTTCTTCTGGTGA
LOC_Os08g43110
Os.27140.2.S1_at--144--10474Chr08:27125407..27125431 (25 bp)
TTACTTCTTCTGGTGAACCACAGAG
LOC_Os08g43110
Os.27140.2.S1_at--231--7994Chr08:27125474..27125498 (25 bp)
GGATGCTGAATACATGGCACTGATA
LOC_Os08g43110
Os.27140.2.S1_at--180--10254Chr08:27125516..27125540 (25 bp)
TTTGGTTCCTCCTCAGAAAGGAAGA
LOC_Os08g43110
Os.27140.2.S1_at--274--8794Chr08:27125750..27125774 (25 bp)
TGTTAAAAATGCCTTCCTACATGGA
LOC_Os08g43110
Target Sequence 
TCCACATCGCCATCTGTTGCATCATCGGCTGGCGTGCATGATGATGTGACTACTGATCAGTCTGATCAAACTGATCAGGC
CATGCCAGAAGCAGCTGTTGCACCGATCAGACCAAAAACACGTCTCCAAAGCGGGATCAGGAAAGAAAAGGTATATACTG
ATGGAACTGTTAAATGGCTAAATTTTACTTCTTCTGGTGAACCACAGAGTCTGGAAGAAGCAGTGAATAATAAACACTGG
AAGGAGGCCATGGATGCTGAATACATGGCACTGATAGAAAACAAGACATGGCATTTGGTTCCTCCTCAGAAAGGAAGAAA
TGTCATAGATTGTAAATGGGTGTATAAGGTCAAAAGGAAAGCAGATGGCAGTCTAGACAGGTATAAAGCACGGTTGGTTG
CAAAAGGATTCAAGCAAAGGTATGGCATTGATTATGANGATACTTTTAGTCCGGTTGTTAAAGCTGCTACTATCAGNATA
GTTTTNTCTCTTGCTGTCTCTAGAGGTTGGAGTCTTAGACAATTGGATGTTAAAAATGCCTTCCTACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27140.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis