Browse Element(s) Details


Os.57534.1.S1_x_at

Description gb:BP184963
DB_XREF= gi:32948391
DB_XREF=BP184963
TID=Os.57534.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57534 (NCBI UniGene Cluster)
UG_TITLE=Vsf-1 protein mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4309011/11bZIP protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43060Os.10140.1.S1_at11/118+27077595..27084173expressed protein
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein
LOC_Os08g43110Os.27140.2.S1_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.2.S2_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.1.S1_a_at10/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110OsAffx.10048.1.S1_x_at1/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57534.1.S1_x_at--138--3051Chr08:27105604..27105628 (25 bp)
AATCGGCAGTCTGCGGCAAGGTCAA
LOC_Os08g43090
Os.57534.1.S1_x_at--680--8812Chr08:27105677..27105701 (25 bp)
TGTTGCAGACAGAGGCTACCACACT
LOC_Os08g43090
Os.57534.1.S1_x_at--19--3311Chr08:27105696..27105720 (25 bp)
CACACTCTCAGCACAGTTGACAATG
LOC_Os08g43090
Os.57534.1.S1_x_at--1075--5591Chr08:27105714..27105827 (25 bp)
GACAATGCTGCAGAGGGACTCCACT
LOC_Os08g43090
Os.57534.1.S1_x_at--649--5391Chr08:27107779..27107803 (25 bp)
GAAGCATTAACTGCCGAGGTCCAGC
LOC_Os08g43090
Os.57534.1.S1_x_at--974--4031Chr08:27107793..27107817 (25 bp)
CGAGGTCCAGCGTCTGAAACTTGCA
LOC_Os08g43090
Os.57534.1.S1_x_at--589--1911Chr08:27107834..27107858 (25 bp)
ACGGTCGTATGTCAAAGGGCCTACA
LOC_Os08g43090
Os.57534.1.S1_x_at--421--5471Chr08:27107868..27107892 (25 bp)
GAACTCCCAGCTGATTCAATTGCAA
LOC_Os08g43090
Os.57534.1.S1_x_at--102--7131Chr08:27107916..27107940 (25 bp)
GTCATCGCAGACGACGCAGCAAGGT
LOC_Os08g43090
Os.57534.1.S1_x_at--706--5571Chr08:27107958..27107982 (25 bp)
GAAATCCGCATAGATCAAGGTCCAA
LOC_Os08g43090
Os.57534.1.S1_x_at--909--8531Chr08:27107988..27108012 (25 bp)
TGGACCTCCTATCGCAAAGCAGTTG
LOC_Os08g43090
Target Sequence 
AATCGGCAGTCTGCGGCAAGGTCAAAGGAGCGTAAGATGAGGTACATTCAANAGCTTGAGCACAAGGTTCAGGTGTTGCA
GACAGAGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAACAATGAGT
TGAAAATCAGGCTGCAAGCNATGGAGCAACAAGCACAGCTAAGAGATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAG
CGTCTGAAACTTGCANCTGGCGAGATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGAT
TCAATTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCACAGAAAT
CCGCATAGATCAAGGTCCAAAAAGCTGGACCTCCTATCGCAAAGCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57534.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis