Browse Element(s) Details


Os.10140.1.S1_at

Description gb:AK066525.1
DB_XREF= gi:32976543
TID=Os.10140.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072L17, full insert sequence.
FL= gb:AK066525.1 gb:AK101733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43020NANA8+27063639..27064597Transferase family protein
LOC_Os08g43030Os.2741.4.S1_x_at2/118+27066547..27067545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g43040Os.15257.1.S1_at11/118+27069428..27072050Transferase family protein, expressed
LOC_Os08g43050Os.49522.1.S1_at10/118+27073030..27077088NB-ARC domain containing protein, expressed
LOC_Os08g43060Os.10140.1.S1_at11/118+27077595..27084173expressed protein
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10140.1.S1_at--94--5351Chr08:27078798..27078822 (25 bp)
GAAGTTCGACCTGGGCAGTCATCCA
LOC_Os08g43060
Os.10140.1.S1_at--1051--7091Chr08:27078750..27078774 (25 bp)
GTCAGACAGGAACGATCTGGCCTTC
LOC_Os08g43060
Os.10140.1.S1_at--160--6411Chr08:27078737..27078761 (25 bp)
GATCTGGCCTTCCTGCAGGTAATAC
LOC_Os08g43060
Os.10140.1.S1_at--120--1471Chr08:27078561..27078582 (22 bp)
AGCAAGTGGCTTGTCGTTCGGTCCA
LOC_Os08g43060
Os.10140.1.S1_at--359--10492Chr08:27077815..27077839 (25 bp)
TTAATTCCGCACCAATTGCTTTTCG
LOC_Os08g43060
Os.10140.1.S1_at--639--5071Chr08:27077791..27077815 (25 bp)
GCAGCGCCTGTATTGGGCCATGTTT
LOC_Os08g43060
Os.10140.1.S1_at--908--6631Chr08:27077760..27077784 (25 bp)
GTTGTACTGAAACTAGTTCCCGATC
LOC_Os08g43060
Os.10140.1.S1_at--85--6811Chr08:27077719..27077743 (25 bp)
GTTTTGCAACCATTGTAACTTGTCT
LOC_Os08g43060
Os.10140.1.S1_at--337--2071Chr08:27077702..27077726 (25 bp)
ACTTGTCTATGCCTGCGTGCCGTGG
LOC_Os08g43060
Os.10140.1.S1_at--298--5271Chr08:27077665..27077689 (25 bp)
GAATGATAGCATCTGTGCCCTTCCA
LOC_Os08g43060
Os.10140.1.S1_at--878--8591Chr08:27077640..27077664 (25 bp)
TGGTGTTACGCCACATTTTAAACTG
LOC_Os08g43060
Target Sequence 
GAAGTTCGACCTGGGCAGTCATCCATGCATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGG
TAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTG
GCTTGTCGTTCGGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGGTTTAAGGTTTAAAAGGG
TTGAAGTCGAAGATGACCAGAATGAATTGTTGTGAATTTAATTCCGCACCAATTGCTTTTCGCAGCGCCTGTATTGGGCC
ATGTTTTGGCAAGTTGTACTGAAACTAGTTCCCGATCAGAAAATACTGAGGAAGTTTTGCAACCATTGTAACTTGTCTAT
GCCTGCGTGCCGTGGCGTGGGGCACCCGAATGATAGCATCTGTGCCCTTCCATGGTGTTACGCCACATTTTAAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis