Browse Element(s) Details


OsAffx.29641.1.S1_at

Description tigr:9636.m04384
TID=OsAffx.29641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4308011/11DNA polymerase delta subunit 4 family, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43040Os.15257.1.S1_at11/118+27069428..27072050Transferase family protein, expressed
LOC_Os08g43050Os.49522.1.S1_at10/118+27073030..27077088NB-ARC domain containing protein, expressed
LOC_Os08g43060Os.10140.1.S1_at11/118+27077595..27084173expressed protein
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003891molecular_functiondelta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29641.1.S1_at--804--8351Chr08:27096827..27096851 (25 bp)
GGCGTCGCCAAGAAACCAATATCCA
LOC_Os08g43080
OsAffx.29641.1.S1_at--454--7231Chr08:27096824..27096848 (25 bp)
GTCGCCAAGAAACCAATATCCAGAA
LOC_Os08g43080
OsAffx.29641.1.S1_at--575--551Chr08:27096807..27096831 (25 bp)
ATCCAGAAAGAAATTACCGCCACAG
LOC_Os08g43080
OsAffx.29641.1.S1_at--344--1411Chr08:27096799..27096823 (25 bp)
AGAAATTACCGCCACAGAACTGCTC
LOC_Os08g43080
OsAffx.29641.1.S1_at--927--1431Chr08:27096788..27096808 (21 bp)
AGAACTGCTCCGAATCCCAAGATTG
LOC_Os08g43080
OsAffx.29641.1.S1_at--1050--9091Chr08:27096687..27096803 (25 bp)
TGCTCCGAATCCCAAGATTGCGGTG
LOC_Os08g43080
OsAffx.29641.1.S1_at--723--5251Chr08:27096681..27096797 (25 bp)
GAATCCCAAGATTGCGGTGATCATG
LOC_Os08g43080
OsAffx.29641.1.S1_at--744--4671Chr08:27096668..27096692 (25 bp)
GCGGTGATCATGATCTTGGCGACGA
LOC_Os08g43080
OsAffx.29641.1.S1_at--1090--5651Chr08:27096618..27096642 (25 bp)
GACATGGACATGACGTACGGCCCGT
LOC_Os08g43080
OsAffx.29641.1.S1_at--285--9931Chr08:27096603..27096627 (25 bp)
TACGGCCCGTGCATCGGCATGACGC
LOC_Os08g43080
OsAffx.29641.1.S1_at--88--8451Chr08:27096463..27096487 (25 bp)
GGCCAAGATTCTCACCGGCAGCAGC
LOC_Os08g43080
Target Sequence 
GGCGTCGCCAAGAAACCAATATCCAGAAAGAAATTACCGCCACAGAACTGCTCCGAATCCCAAGATTGCGGTGATCATGA
TCTTGGCGACGAGGTGGAGGAGCAGCTGCAGCAGTTCGACATGGACATGACGTACGGCCCGTGCATCGGCATGACGCGCC
TCCGACGGTGGGAGCGCGCCGCCGCCATGGGCCTGCGACCGCCGCCCCGTCTCCGGGACCTACTCCTGCCACCTCCGGCG
CCTCATCCTCTGCCATCGTCTTCTTCGTCTCCGGCCAAGATTCTCACCGGCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis