Browse Element(s) Details


OsAffx.17489.1.S1_at

Description tigr:9636.m04387
TID=OsAffx.17489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein
LOC_Os08g43110Os.27140.2.S1_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.2.S2_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.1.S1_a_at10/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110OsAffx.10048.1.S1_x_at1/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17489.1.S1_at--639--8491Chr08:27114163..27114187 (25 bp)
TGGCTCGGCTCAACTACGGTTACTG
LOC_Os08g43100
OsAffx.17489.1.S1_at--46--9711Chr08:27114172..27114196 (25 bp)
TCAACTACGGTTACTGCAGCAAGAC
LOC_Os08g43100
OsAffx.17489.1.S1_at--321--10471Chr08:27114182..27114206 (25 bp)
TTACTGCAGCAAGACCGGGACAACG
LOC_Os08g43100
OsAffx.17489.1.S1_at--650--5811Chr08:27114194..27114218 (25 bp)
GACCGGGACAACGACGATTACTACA
LOC_Os08g43100
OsAffx.17489.1.S1_at--730--4091Chr08:27114205..27114229 (25 bp)
CGACGATTACTACAGCAAGGGCTAT
LOC_Os08g43100
OsAffx.17489.1.S1_at--100--5191Chr08:27114219..27114243 (25 bp)
GCAAGGGCTATGACCGAGCTTGGGT
LOC_Os08g43100
OsAffx.17489.1.S1_at--427--911Chr08:27114245..27114269 (25 bp)
AGGCGGATTTGCTTTCAGCGAGGTC
LOC_Os08g43100
OsAffx.17489.1.S1_at--476--531Chr08:27114288..27114312 (25 bp)
ATCGCTGGGCTCAGGAGTGCCAGAT
LOC_Os08g43100
OsAffx.17489.1.S1_at--798--9631Chr08:27114298..27114322 (25 bp)
TCAGGAGTGCCAGATCCGCTGTCAT
LOC_Os08g43100
OsAffx.17489.1.S1_at--630--7271Chr08:27114304..27114328 (25 bp)
GTGCCAGATCCGCTGTCATCGAGCT
LOC_Os08g43100
OsAffx.17489.1.S1_at--695--8191Chr08:27114331..27114355 (25 bp)
GGAAGGGCGTATCCACCATCCTTGG
LOC_Os08g43100
Target Sequence 
TGGCTCGGCTCAACTACGGTTACTGCAGCAAGACCGGGACAACGACGATTACTACAGCAAGGGCTATGACCGAGCTTGGG
TGAGGCGGATTTGCTTTCAGCGAGGTCGGGAGAGGTGGATCCACCATCGCTGGGCTCAGGAGTGCCAGATCCGCTGTCAT
CGAGCTCGGGAAGGGCGTATCCACCATCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis