Browse Element(s) Details


Os.55221.1.S1_at

Description gb:AK107688.1
DB_XREF= gi:32992897
TID=Os.55221.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B06, full insert sequence.
FL= gb:AK107688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4312011/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein
LOC_Os08g43110Os.27140.2.S1_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.2.S2_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.1.S1_a_at10/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110OsAffx.10048.1.S1_x_at1/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55221.1.S1_at--618--3731Chr08:27143796..27143820 (25 bp)
CTACACGCTCTATGGGATGATGACA
LOC_Os08g43120
Os.55221.1.S1_at--620--6311Chr08:27143814..27143838 (25 bp)
GATGACAGTAGCACTAACACCTAAC
LOC_Os08g43120
Os.55221.1.S1_at--318--6051Chr08:27143842..27143866 (25 bp)
GAGATAGCAGCTGGGTTGTCCTTCC
LOC_Os08g43120
Os.55221.1.S1_at--844--4291Chr08:27143865..27143889 (25 bp)
CCTCATCTTCATCTTTTGGAATGTC
LOC_Os08g43120
Os.55221.1.S1_at--342--8211Chr08:27143882..27143906 (25 bp)
GGAATGTCTTCTCTGGATTCATCAT
LOC_Os08g43120
Os.55221.1.S1_at--245--31Chr08:27143905..27144189 (25 bp)
ATTGGAAGACAGATGATCCCGGTGT
LOC_Os08g43120
Os.55221.1.S1_at--903--7411Chr08:27144201..27144225 (25 bp)
GTGTATTGGGCAAACCCGGCGGCAT
LOC_Os08g43120
Os.55221.1.S1_at--277--1771Chr08:27144262..27144286 (25 bp)
ACCGGACGGAGCTGATCCAGGTGCC
LOC_Os08g43120
Os.55221.1.S1_at--1077--2911Chr08:27144309..27144333 (25 bp)
AAGGAGTTCCTGGAGGGCTACCTCG
LOC_Os08g43120
Os.55221.1.S1_at--166--2631Chr08:27144564..27144588 (25 bp)
AACCGTAAGGGATTTGCATGTGTAA
LOC_Os08g43120
Os.55221.1.S1_at--1083--5191Chr08:27144599..27144623 (25 bp)
GAATTGTTGTAGTACCATGGTCGAG
LOC_Os08g43120
Target Sequence 
CTACACGCTCTATGGGATGATGACAGTAGCACTAACACCTAACATTGAGATAGCAGCTGGGTTGTCCTTCCTCATCTTCA
TCTTTTGGAATGTCTTCTCTGGATTCATCATTGGAAGACAGATGATCCCGGTGTGGTGGAGATGGGTGTATTGGGCAAAC
CCGGCGGCATGGACGGTGTACGGGCTCATGTTCTCGCAGCTGGGAGACCGGACGGAGCTGATCCAGGTGCCAGGGCAGCC
AGAGCAGACGGTGAAGGAGTTCCTGGAGGGCTACCTCGGACTCCAGGACCGCTACTTCAACCTCGTCACCAGCCTGCACG
TCGCCATCATCGCGCTCTTCACCTTCCTCTTCTTCCTCTCCATCAAGCACCTCAAGTTCCAGAGGCGGTAGCACGGAATT
GATGCGTGCAAACTGCAAATATACACTAATAACCAATCACTTAACTGTACAAATGTAAGAGAACATAACAAAAATGCACA
ACATAAGGATTTGTTACTAAAATATGTAAACCGTAAGGGATTTGCATGTGTAATAGCAGTATAGAATTGTTGTAGTACCA
TGGTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis