Browse Element(s) Details


Os.57358.1.S1_at

Description gb:AK111366.1
DB_XREF= gi:32996575
TID=Os.57358.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H12, full insert sequence.
FL= gb:AK111366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4315010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57358.1.S1_at--137--4571Chr08:27163237..27163261 (25 bp)
GCGCTTTAACGCACACGGCCGGAGC
LOC_Os08g43150
Os.57358.1.S1_at--152--7551Chr08:27163123..27163147 (25 bp)
GTGGCGAGAGTTACCGCCTGGCCAT
LOC_Os08g43150
Os.57358.1.S1_at--986--1791Chr08:27163111..27163135 (25 bp)
ACCGCCTGGCCATCACGTGATTGAT
LOC_Os08g43150
Os.57358.1.S1_at--845--4351Chr08:27163001..27163025 (25 bp)
CCACGTCGACACGTGTTGGGACGCG
LOC_Os08g43150
Os.57358.1.S1_at--584--7511Chr08:27162889..27163213 (25 bp)
GTGGTTCCCGCGAATATGCGCAGTT
LOC_Os08g43150
Os.57358.1.S1_at--1071--251Chr08:27162876..27162900 (25 bp)
ATATGCGCAGTTTCGCACGCGGGAT
LOC_Os08g43150
Os.57358.1.S1_at--791--9271Chr08:27162845..27162869 (25 bp)
TCCGATTACCGGGATCTAAGACACA
LOC_Os08g43150
Os.57358.1.S1_at--954--3411Chr08:27162822..27162846 (25 bp)
CAGACAGTGGTACAGCTAATGGCAT
LOC_Os08g43150
Os.57358.1.S1_at--1088--8271Chr08:27162802..27162826 (25 bp)
GGCATTAGACTATTCCTAATCCAAG
LOC_Os08g43150
Os.57358.1.S1_at--523--2411Chr08:27162731..27162755 (25 bp)
AAACACTACTCTTTCATGTGCACCA
LOC_Os08g43150
Os.57358.1.S1_at--444--9631Chr08:27162718..27162742 (25 bp)
TCATGTGCACCACTTGTTCATATTT
NONE
Target Sequence 
GCGCTTTAACGCACACGGCCGGAGCCCGGCGGTGGGGCCAAGCCGGTGGTGGTTCGGGTGTGGCCAAAGTGGTGGTGGTG
TGGTGGGTCAAAGAGCGCCCTCGCGGACCGTGCGGTGGCGAGAGTTACCGCCTGGCCATCACGTGATTGATGGGGTGGGC
CCGCACGTTTGCCGCCGCGTGGTGGGGGCCGCGTGGGTGGGAGCGGTAGGTGGGGTCCAACTGCCTCGGGTGGGCACCAC
GTCGACACGTGTTGGGACGCGGGTGGTGGGGACGGTGGGCCCTTGTCCTCCTCTCCCCTATGGGTGGGGACCTGGTCTGG
TGGGGCCCGAGGCGTGGGTGCCGGTGACGTGGTTCCCGCGAATATGCGCAGTTTCGCACGCGGGATCCCAACTCCGATTA
CCGGGATCTAAGACACAGACAGTGGTACAGCTAATGGCATTAGACTATTCCTAATCCAAGACACATAATTTTCATAAATT
TTATTTCATCGAGAAACTAGTGTACTAAACACTACTCTTTCATGTGCACCACTTGTTCATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis