Browse Element(s) Details


OsAffx.6121.1.S1_at

Description tigr:9636.m04398
TID=OsAffx.6121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DRE-binding protein 1A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4320011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6121.1.S1_at--526--1791Chr08:27188316..27188340 (25 bp)
ACCGCCTGTGGGTCGGCACGTTCGA
LOC_Os08g43200
OsAffx.6121.1.S1_at--1143--6711Chr08:27188029..27188053 (25 bp)
GTTCTGTCACCCAACGACGACAATG
LOC_Os08g43200
OsAffx.6121.1.S1_at--514--5791Chr08:27188014..27188038 (25 bp)
GACGACAATGCCTCGTCGGCGTCCA
LOC_Os08g43200
OsAffx.6121.1.S1_at--684--3931Chr08:27187974..27187998 (25 bp)
CGGCGTTGGACCACGGCGACATGTT
LOC_Os08g43200
OsAffx.6121.1.S1_at--165--10871Chr08:27187969..27187993 (25 bp)
TTGGACCACGGCGACATGTTCGGTG
LOC_Os08g43200
OsAffx.6121.1.S1_at--658--1711Chr08:27187965..27187989 (25 bp)
ACCACGGCGACATGTTCGGTGGCAT
LOC_Os08g43200
OsAffx.6121.1.S1_at--240--4111Chr08:27187958..27187982 (25 bp)
CGACATGTTCGGTGGCATGCGCACC
LOC_Os08g43200
OsAffx.6121.1.S1_at--447--7531Chr08:27187947..27187971 (25 bp)
GTGGCATGCGCACCGATCTGTACTT
LOC_Os08g43200
OsAffx.6121.1.S1_at--741--9151Chr08:27187941..27187965 (25 bp)
TGCGCACCGATCTGTACTTCGCGAG
LOC_Os08g43200
OsAffx.6121.1.S1_at--1106--4071Chr08:27187878..27187902 (25 bp)
CGACCACCGCTGAGGGTTTCTGCGA
LOC_Os08g43200
OsAffx.6121.1.S1_at--673--4211Chr08:27187872..27187896 (25 bp)
CCGCTGAGGGTTTCTGCGACGACGA
LOC_Os08g43200
Target Sequence 
ACCGCCTGTGGGTCGGCACGTTCGACACCGCCGAGGAGGCCGCGCGCGCGCACGACGCCGCCATGCTCGCCCTGTGCGGG
GCCTCCGCCAGCCTCAACTTCGCCGACTCCGCCTGGCTGCTCCACGTCCCCCGCGCCCCCGTCGCCTCCGGCCATGACCA
GCTGCCCGACGTGCAGCGCGCCGCCAGCGAGGCCGTCGCCGAGTTCCAGCGCCGGGGAAGTACTGCCGCCACTGCCACCG
CCACCTCCGGCGACGCCGCATCCACCGCTCCTCCGTCGTCGTCGCCCGTTCTGTCACCCAACGACGACAATGCCTCGTCG
GCGTCCACTCCTGCGGTGGCGGCGGCGTTGGACCACGGCGACATGTTCGGTGGCATGCGCACCGATCTGTACTTCGCGAG
CTTGGCGCAGGGTCTGCTCATCGAGCCGCCGCCGCCGCCGACCACCGCTGAGGGTTTCTGCGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis