Browse Element(s) Details


Os.51088.1.S1_x_at

Description gb:AK060609.1
DB_XREF= gi:32970627
TID=Os.51088.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D03, full insert sequence.
FL= gb:AK060609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g431708/11Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os04g050502/11pectate lyase 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004421molecular_functionhydroxymethylglutaryl-CoA synthase activity
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51088.1.S1_x_at--385--9831Chr04:2472498..2472522 (25 bp)
TAAAAGCTACTACCGGAACATCGCG
LOC_Os04g05050
Os.51088.1.S1_x_at--680--5471Chr04:2472513..2472542 (25 bp)
GAACATCGCGGGTTACAGCCTTTTC
LOC_Os04g05050
Os.51088.1.S1_x_at--1016--8451NONE
TGGCCTACTGGTGGGTGCCAAGAAT
NONE
Os.51088.1.S1_x_at--924--2731Chr08:27173630..27173654 (25 bp)
AAGAATGCTGTGAGCTCACGCGCAT
LOC_Os08g43170
Os.51088.1.S1_x_at--62--9691Chr08:27173645..27173669 (25 bp)
TCACGCGCATTATTAGCCATCTTGT
LOC_Os08g43170
Os.51088.1.S1_x_at--224--9991Chr08:27173658..27173682 (25 bp)
TAGCCATCTTGTTGCTCAGTTTGAT
LOC_Os08g43170
Os.51088.1.S1_x_at--176--6111Chr08:27173696..27173720 (25 bp)
GAGTGCTCAGTCTAGATATCTTCCA
LOC_Os08g43170
Os.51088.1.S1_x_at--362--9171Chr08:27173741..27173765 (25 bp)
TGCCCCTCAGCTTGTTTTTACTTTA
LOC_Os08g43170
Os.51088.1.S1_x_at--861--9571Chr08:27173843..27173867 (25 bp)
TCATTGTTACTAGCTAATTCCCTCC
LOC_Os08g43170
Os.51088.1.S1_x_at--146--9311Chr08:27173865..27173889 (25 bp)
TCCCCATGCTTTATTGTTCTCAGTA
LOC_Os08g43170
Os.51088.1.S1_x_at--192--2431Chr08:27173899..27173923 (25 bp)
AAAACTGTTGGCTGTGTGCATCTTA
LOC_Os08g43170
Target Sequence 
TAAAAGCTACTACCGGAACATCGCGGGTTACAGCCTTTTCTTTTCTCTCCCCTTCTCCCTCTCTCTCTCTCTTTTTTGCA
GCTTTTGACAATGGTTATATATGACCCTCTCCAAGAAGATTCACCATTTCCTCAAAAAAAAAAAAAAAAAGGCCAAGCAT
CGAGTCGGCCTTGTTGGCCTACTGGTGGGTGCCAAGAATGCTGTGAGCTCACGCGCATTATTAGCCATCTTGTTGCTCAG
TTTGATGTATTTATTCTTAGAGTGCTCAGTCTAGATATCTTCCAATAATTCATTGTTCCCCTCGTGCCCCTCAGCTTGTT
TTTACTTTAAGCTGAACAATAAACCTTTGTGTAGTACTGTAGTAGTACTAGGTCCTAGTATCCTTGTTTCCTCTAGCTCT
ATTGCTTCATTGTTACTAGCTAATTCCCTCCCCATGCTTTATTGTTCTCAGTAATATCCTGCAAAACTGTTGGCTGTGTG
CATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51088.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis