Browse Element(s) Details


Os.10128.1.S1_at

Description gb:AK101517.1
DB_XREF= gi:32986726
TID=Os.10128.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046H09, full insert sequence.
FL= gb:AK063995.1 gb:AK101517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4319011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0008270molecular_functionzinc ion binding
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10128.1.S1_at--882--8131Chr08:27184902..27184926 (25 bp)
GGACATCGACGTGAGCCTGGACTGC
LOC_Os08g43190
Os.10128.1.S1_at--1095--10191Chr08:27185066..27185090 (25 bp)
TATTCCGGTACAAGGACACGTGGCC
LOC_Os08g43190
Os.10128.1.S1_at--751--1911Chr08:27185083..27185107 (25 bp)
ACGTGGCCGCTCTGCATCGAGTTCC
LOC_Os08g43190
Os.10128.1.S1_at--552--4071Chr08:27185100..27185124 (25 bp)
CGAGTTCCTCCGCAGCGGCAAGATC
LOC_Os08g43190
Os.10128.1.S1_at--459--1791Chr08:27185147..27185171 (25 bp)
ACCGATTCGGGTTCTCGCAGGAGGA
LOC_Os08g43190
Os.10128.1.S1_at--1107--9611Chr08:27185222..27185246 (25 bp)
TCATGTTCAACCTCTAGATCGATCC
LOC_Os08g43190
Os.10128.1.S1_at--801--6391Chr08:27185254..27185278 (25 bp)
GATCGATCGACAGCAAAATATGTGA
LOC_Os08g43190
Os.10128.1.S1_at--463--6851Chr08:27185282..27185306 (25 bp)
GTTTGGAACGTATGTCGATCGGACA
LOC_Os08g43190
Os.10128.1.S1_at--1035--2291Chr08:27185310..27185334 (25 bp)
AAATGTGTGCTTGCTTTGCTGGTTG
LOC_Os08g43190
Os.10128.1.S1_at--648--3631Chr08:27185319..27185343 (25 bp)
CTTGCTTTGCTGGTTGCCGTGTCTG
LOC_Os08g43190
Os.10128.1.S1_at--880--7451Chr08:27185337..27185361 (25 bp)
GTGTCTGTCTGTCTCTACATGAATA
LOC_Os08g43190
Target Sequence 
GGACATCGACGTGAGCCTGGACTGCGCCGGGTTCAGCAAGACGGTGGCGACGGCGCTGGAGGCGACGCGCGGCGGCGGGA
AGGTGTGCCTCGTCGGGATGGGGCACAACGAGATGACGGTGCCGCTGACGTCGGCGGCGATCAGGGAGGTGGACGTGGTG
GGGATATTCCGGTACAAGGACACGTGGCCGCTCTGCATCGAGTTCCTCCGCAGCGGCAAGATCGACGTGAAGCCGCTCAT
CACCCACCGATTCGGGTTCTCGCAGGAGGACGTGGAGGAGGCGTTCGAGGTCAGCGCCCGTGGCCGCGACGCCATCAAGG
TCATGTTCAACCTCTAGATCGATCCATCCATCGATCGATCGACAGCAAAATATGTGACGGGTTTGGAACGTATGTCGATC
GGACAAAAAAATGTGTGCTTGCTTTGCTGGTTGCCGTGTCTGTCTGTCTCTACATGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis