Browse Element(s) Details


Os.189.1.S1_at

Description gb:D87261.1
DB_XREF= gi:2580439
TID=Os.189.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.189 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for PCF2, complete cds.
PROD=PCF2
FL= gb:D87261.1 gb:AK119660.1 gb:AK102666.1 gb:AK060536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4316011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.189.1.S1_at--1090--7431Chr08:27163879..27163903 (25 bp)
GTGTCAACAACCATCGTCCAGAACA
LOC_Os08g43160
Os.189.1.S1_at--228--9231Chr08:27163863..27163887 (25 bp)
TCCAGAACAGCAACTCGGGCGAGCA
LOC_Os08g43160
Os.189.1.S1_at--538--5711Chr08:27163714..27163738 (25 bp)
GACTCCAGCCCGGAAGAGTAGCAAA
LOC_Os08g43160
Os.189.1.S1_at--822--9031Chr08:27163643..27163667 (25 bp)
TGCACGCCAAAAAGTCCACAAGTCC
LOC_Os08g43160
Os.189.1.S1_at--817--10431Chr08:27163602..27163626 (25 bp)
TTAGGTTCCTTTTTGCTCCGATTCA
LOC_Os08g43160
Os.189.1.S1_at--597--4791Chr08:27163588..27163612 (25 bp)
GCTCCGATTCAATTTCTCGATCGTT
LOC_Os08g43160
Os.189.1.S1_at--941--9311Chr08:27163574..27163598 (25 bp)
TCTCGATCGTTTCTTTCCCGCAATA
LOC_Os08g43160
Os.189.1.S1_at--1065--5191Chr08:27163555..27163579 (25 bp)
GCAATATTCCTCATCCTTGTCATGA
LOC_Os08g43160
Os.189.1.S1_at--1056--5471Chr08:27163529..27163553 (25 bp)
GAACTAGTAATTACTCCCGCGTGTT
LOC_Os08g43160
Os.189.1.S1_at--841--8671Chr08:27163495..27163519 (25 bp)
TGTGCTGGTACTACTCCTTACTTTC
LOC_Os08g43160
Os.189.1.S1_at--283--4011Chr08:27163469..27163493 (25 bp)
CGTCCTTAGCTCAGTGTTTAGTCTT
LOC_Os08g43160
Target Sequence 
GTGTCAACAACCATCGTCCAGAACAGCAACTCGGGCGAGCACATGCACTTCTCCGGCGCCGACTCCCACGAGCAGCAGCG
GCGCGGGCGGAAGGAAGGCAACAGCGGCGGCGTGGTGGACCACCCGGAGGAGGACGAAGACGACGACGACGACGAGCCGG
TCTCCGACTCCAGCCCGGAAGAGTAGCAAACACACACAGCACAACACAAAAAAAGCAAGCGAGGCGAGCACTCCACTGCA
CGCCAAAAAGTCCACAAGTCCCCCCCACACACAAAGCTTAGGTTCCTTTTTGCTCCGATTCAATTTCTCGATCGTTTCTT
TCCCGCAATATTCCTCATCCTTGTCATGATGAACTAGTAATTACTCCCGCGTGTTGTGCTGTGCTGTGCTGGTACTACTC
CTTACTTTCCCGTCCTTAGCTCAGTGTTTAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis