Browse Element(s) Details


Os.6501.1.A1_at

Description gb:AK121240.1
DB_XREF= gi:37990863
TID=Os.6501.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097I24, full insert sequence.
FL= gb:AK121240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6501.1.A1_at--947--2091Chr08:27174516..27174540 (25 bp)
ACATCTGCTTCTCCGACAAGTACGA
LOC_Os08g43180
Os.6501.1.A1_at--40--7691Chr08:27174394..27174418 (25 bp)
GGGTTCTTGACCAACTTCGACGACG
LOC_Os08g43180
Os.6501.1.A1_at--124--10631Chr08:27174379..27174403 (25 bp)
TTCGACGACGCCTACAGGTTGTGGG
LOC_Os08g43180
Os.6501.1.A1_at--394--10551Chr08:27174340..27174364 (25 bp)
TTCTTGGACGCCGATTTCGTGGAGA
LOC_Os08g43180
Os.6501.1.A1_at--310--31Chr08:27174234..27174258 (25 bp)
ATTGGTACACTTCACTGTCACTGTC
LOC_Os08g43180
Os.6501.1.A1_at--1047--1951Chr08:27174215..27174239 (25 bp)
ACTGTCACTGTTCGCCATTCTTTTG
LOC_Os08g43180
Os.6501.1.A1_at--678--4311Chr08:27174201..27174225 (25 bp)
CCATTCTTTTGGGATCAGCTCGATC
LOC_Os08g43180
Os.6501.1.A1_at--78--9111Chr08:27174163..27174187 (25 bp)
TGCTCCGTCCATTCTTTGTGTGAGA
LOC_Os08g43180
Os.6501.1.A1_at--883--911Chr08:27174137..27174161 (25 bp)
AGGCTCGCTCCAGTGTGTTCATGAT
LOC_Os08g43180
Os.6501.1.A1_at--318--8751Chr08:27174107..27174131 (25 bp)
TGTAAAATGTAGTCTTTGCTTCCTT
LOC_Os08g43180
Os.6501.1.A1_at--677--271Chr08:27174074..27174098 (25 bp)
ATATGTGCCTATTACTTGTTCGCTA
LOC_Os08g43180
Target Sequence 
ACATCTGCTTCTCCGACAAGTACGACGCCGACAGGGCCGCCGTCCTCGAGCACATCGACGGCGGCGGCAAGAGGAAGGAC
GCCGCCGGCGAGATGGGGATCTACGTGGTGAACGCGTCGCTGGGGTTCTTGACCAACTTCGACGACGCCTACAGGTTGTG
GGCGTTCGTGGCCAAGTTCTTGGACGCCGATTTCGTGGAGAAGGAGCGGTGGAGGTACACCGCGCTCAACCAGAAGACGG
TGGAGGTGTAGCCGACATGTCCATCCACCTTCAGCTTNCACCATTGGTACACTTCACTGTCACTGTCACTGTTCGCCATT
CTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCTGCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCA
TGATTATACTGTAAAATGTAGTCTTTGCTTCCTTNGAAAAAAATATGTGCCTATTACTTGTTCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6501.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis