Browse Element(s) Details


OsAffx.29642.1.S1_at

Description tigr:9636.m04399
TID=OsAffx.29642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DRE-binding protein 1A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4321011/11AP2 domain containing protein
LOC_Os04g256701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29642.1.S1_at--479--4071Chr08:27191978..27192002 (25 bp)
CGAGCAGCGGGAGTCATCATCGTCC
LOC_Os08g43210
OsAffx.29642.1.S1_at--837--1631Chr08:27191973..27191997 (25 bp)
AGCGGGAGTCATCATCGTCCGTGTT
LOC_Os08g43210
OsAffx.29642.1.S1_at--648--8011Chr08:27191969..27191993 (25 bp)
GGAGTCATCATCGTCCGTGTTCCCA
LOC_Os08g43210
OsAffx.29642.1.S1_at--223--1171Chr08:27191967..27191991 (25 bp)
AGTCATCATCGTCCGTGTTCCCACT
LOC_Os08g43210
OsAffx.29642.1.S1_at--544--4091Chr08:27191840..27191864 (25 bp)
CGACGAGGAGGCATCACCGTTCGAG
LOC_Os08g43210
OsAffx.29642.1.S1_at--203--4071Chr08:27191837..27191861 (25 bp)
CGAGGAGGCATCACCGTTCGAGCTG
LOC_Os08g43210
OsAffx.29642.1.S1_at--986--7991Chr08:27191834..27191858 (25 bp)
GGAGGCATCACCGTTCGAGCTGGAC
LOC_Os08g43210
OsAffx.29642.1.S1_at--313--3911Chr08:27191815..27191839 (25 bp)
CTGGACGTGGTGAGCGACATGGGCT
LOC_Os08g43210
OsAffx.29642.1.S1_at--63--9911Chr08:27191782..27191806 (25 bp)
TACTACGCGAGCTTAGCGGAGGGCC
LOC_Os08g43210
OsAffx.29642.1.S1_at--245--9931Chr08:27191779..27191803 (25 bp)
TACGCGAGCTTAGCGGAGGGCCTCC
LOC_Os08g43210
OsAffx.29642.1.S1_at--305--6133Chr04:14863134..14863240 (24 bp)
GAGGGCCTCCTCATGGAGCCGCCGG
LOC_Os04g25670
Target Sequence 
CGAGCAGCGGGAGTCATCATCGTCCGTGTTCCCACTCGCCATCGACGTCGTCGCCGAGGACGCCATGTCCGCCACGTCCG
AGCCGTCCGCCGCGAGCGACGACGACGCCGTCACCAGCAGCAGCAGCACGACCGACGCCGACGAGGAGGCATCACCGTTC
GAGCTGGACGTGGTGAGCGACATGGGCTGGAGCCTGTACTACGCGAGCTTAGCGGAGGGCCTCCTCATGGAGCCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis