Browse Element(s) Details


OsAffx.17492.1.S1_at

Description tigr:9636.m04403
TID=OsAffx.17492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4325011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17492.1.S1_at--974--8711Chr08:27213019..27213043 (25 bp)
TGTCGACGCGCGTCGGGCACGAGCT
LOC_Os08g43250
OsAffx.17492.1.S1_at--11--1411Chr08:27212791..27212815 (25 bp)
AGACGGTCGGCTGCGGTGTGCTGCG
LOC_Os08g43250
OsAffx.17492.1.S1_at--850--9291Chr08:27212659..27212683 (25 bp)
TCCGCGGCATGTGGGCCGGCATGCT
LOC_Os08g43250
OsAffx.17492.1.S1_at--918--4071Chr08:27212511..27212535 (25 bp)
CGACGTCGTCGTCAAAGGCGATCAT
LOC_Os08g43250
OsAffx.17492.1.S1_at--168--5771Chr08:27212510..27212534 (25 bp)
GACGTCGTCGTCAAAGGCGATCATG
LOC_Os08g43250
OsAffx.17492.1.S1_at--144--1911Chr08:27212509..27212533 (25 bp)
ACGTCGTCGTCAAAGGCGATCATGC
LOC_Os08g43250
OsAffx.17492.1.S1_at--211--7211Chr08:27212507..27212531 (25 bp)
GTCGTCGTCAAAGGCGATCATGCAG
LOC_Os08g43250
OsAffx.17492.1.S1_at--1070--2291Chr08:27212498..27212522 (25 bp)
AAAGGCGATCATGCAGACGCCGCCA
LOC_Os08g43250
OsAffx.17492.1.S1_at--142--911Chr08:27212496..27212520 (25 bp)
AGGCGATCATGCAGACGCCGCCAAA
LOC_Os08g43250
OsAffx.17492.1.S1_at--548--4051Chr08:27212493..27212517 (25 bp)
CGATCATGCAGACGCCGCCAAAGTA
LOC_Os08g43250
OsAffx.17492.1.S1_at--396--5051Chr08:27212486..27212510 (25 bp)
GCAGACGCCGCCAAAGTAAAGGCAG
LOC_Os08g43250
Target Sequence 
TGTCGACGCGCGTCGGGCACGAGCTCGGCGCGGGGCGGCCGGAGCGCGCGCGCCTCGCCGCCCGCGTCGGGCTCGCCTGC
GGCGCCGCGCTCGGCGTCGTGGCGTGCGCGTTCGCGGCGTCCCTGAGAGGGGTGTGGGCGCGGATGTTCACCGCCGACGC
CACCATCCTGCGGCTGGCGTCGTCGGCGCTGCCCATCCTCGGCGCCGCCGAGCTGGGGAACTGCCCGCAGACGGTCGGCT
GCGGTGTGCTGCGCGGCAGCGCGCGGCCGGGGAGGGCGGCGAGGATCAACGTCTCGGCGTTCTACGGCGTCGGCATGCCC
GCCGCCCTGGCGCTGGCGTTCTGGCCGGCGCGCCTCGACTTCCGCGGCATGTGGGCCGGCATGCTCGCCGCGCAGCTGGT
GTGCGCGGCGCTGATGCTGCTCGCCGTGCGGCGCACCGACTGGGACGAGCAGGCCGCCCGCGCGCGCGAGATCACCGGCG
CCGTCGCCGGCGTCGTCGTTGGCGATGGCGACGTCGTCGTCAAAGGCGATCATGCAGACGCCGCCAAAGTAAAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis